Browse Element(s) Details


Os.55384.1.S1_s_at

Description gb:AK107985.1
DB_XREF= gi:32993194
TID=Os.55384.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-E10, full insert sequence.
FL= gb:AK107985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41490Os.9468.2.A1_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490Os.9468.2.A2_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490OsAffx.20077.1.S1_x_at1/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41500Os.9468.1.S1_at11/1112+25668463..25672910thiosulfate sulfurtransferase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_x_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41520OsAffx.20078.1.S1_at10/1112+25679616..25680740receptor-like protein kinase, putative
LOC_Os12g41530OsAffx.20079.1.S1_x_at1/1112+25685019..25687067Protein kinase domain containing protein
LOC_Os12g41540OsAffx.20079.1.S1_x_at11/1112+25689204..25691635lectin protein kinase, putative, expressed
LOC_Os12g41550Os.55384.1.S1_s_at11/1112+25692632..25693149expressed protein
LOC_Os12g41560Os.49172.1.S1_at11/1112+25694108..25695760expressed protein
LOC_Os12g41570OsAffx.7856.1.S1_at11/1112+25696107..25696979hypothetical protein
LOC_Os12g41580OsAffx.32137.1.S1_at11/1112+25702659..25704244hypothetical protein
LOC_Os12g41590Os.9887.1.S1_at11/1112+25704406..25707500oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g41600Os.28213.1.S1_at11/1112+25710404..25712018expressed protein
LOC_Os12g41610NANA12+25717312..25717683hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55384.1.S1_s_at--1014--1931Chr12:25693037..25693061 (25 bp)
ACGGCCACGCTGAAGGCACGACGGC
LOC_Os12g41550
Os.55384.1.S1_s_at--904--4134Chr04:32979348..32979721 (25 bp)
CGCGGCATTCGAGAAGCTTTGGCTT
NONE
Os.55384.1.S1_s_at--1153--10232Chr12:25692920..25692944 (25 bp)
TTTGGCTTGCGCTGGACCATGCTAG
LOC_Os12g41550
Os.55384.1.S1_s_at--824--4712Chr12:25692910..25692934 (25 bp)
GCTGGACCATGCTAGCACAACAAAT
LOC_Os12g41550
Os.55384.1.S1_s_at--338--2432Chr12:25692892..25692916 (25 bp)
AACAAATCCAACCAGGCGGCAGTAC
LOC_Os12g41550
Os.55384.1.S1_s_at--461--8352Chr12:25692878..25692902 (25 bp)
GGCGGCAGTACGAATGGTCCAGATA
LOC_Os12g41550
Os.55384.1.S1_s_at--434--2051Chr12:25692827..25692851 (25 bp)
AAACTTGAATTTGAAATGGCCGCCA
LOC_Os12g41550
Os.55384.1.S1_s_at--571--871Chr12:25692812..25692836 (25 bp)
ATGGCCGCCAAGATTTTGGCTTGTA
LOC_Os12g41550
Os.55384.1.S1_s_at--579--2772Chr12:25692751..25692775 (25 bp)
AAGAGGCAGACCATGTTAAAAGTTG
LOC_Os12g41550
Os.55384.1.S1_s_at--142--811Chr12:25692722..25692746 (25 bp)
ATGGGTTCCCTACTTGTTATTGCAA
LOC_Os12g41550
Os.55384.1.S1_s_at--565--6392Chr12:25692684..25692708 (25 bp)
GATCTTGGAGTATATGTACGAACTG
LOC_Os12g41550
Target Sequence 
ACGGCCACGCTGAAGGCACGACGGCGACGGTGGCCCCTGCGCGGCGGCGGTGGCGGCGGCGACGGCGGCCCCTGCACGGC
GGCGACGACGGCGGCCCCTGCGCGGCATTCGAGAAGCTTTGGCTTGCGCTGGACCATGCTAGCACAACAAATCCAACCAG
GCGGCAGTACGAATGGTCCAGATAGAGCGAAAGTTGAGGAAGACAAAATGAAACTTGAATTTGAAATGGCCGCCAAGATT
TTGGCTTGTAAAGCAACATATAAGAAAAAAATTACAAAGCTAAACAAAGAGGCAGACCATGTTAAAAGTTGGTTCATGGG
TTCCCTACTTGTTATTGCAATTCTTATGTACAAGATCTTGGAGTATATGTACGAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55384.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis