Browse Element(s) Details


OsAffx.7856.1.S1_at

Description tigr:9640.m04072
TID=OsAffx.7856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4157011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41500Os.9468.1.S1_at11/1112+25668463..25672910thiosulfate sulfurtransferase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_x_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41520OsAffx.20078.1.S1_at10/1112+25679616..25680740receptor-like protein kinase, putative
LOC_Os12g41530OsAffx.20079.1.S1_x_at1/1112+25685019..25687067Protein kinase domain containing protein
LOC_Os12g41540OsAffx.20079.1.S1_x_at11/1112+25689204..25691635lectin protein kinase, putative, expressed
LOC_Os12g41550Os.55384.1.S1_s_at11/1112+25692632..25693149expressed protein
LOC_Os12g41560Os.49172.1.S1_at11/1112+25694108..25695760expressed protein
LOC_Os12g41570OsAffx.7856.1.S1_at11/1112+25696107..25696979hypothetical protein
LOC_Os12g41580OsAffx.32137.1.S1_at11/1112+25702659..25704244hypothetical protein
LOC_Os12g41590Os.9887.1.S1_at11/1112+25704406..25707500oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g41600Os.28213.1.S1_at11/1112+25710404..25712018expressed protein
LOC_Os12g41610NANA12+25717312..25717683hypothetical protein
LOC_Os12g41620Os.8281.1.S1_at11/1112+25718496..25724633transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7856.1.S1_at--743--3951Chr12:25696574..25696598 (25 bp)
CGGAACGCGACGAGCAGCGACTGCA
LOC_Os12g41570
OsAffx.7856.1.S1_at--625--5551Chr12:25696538..25696562 (25 bp)
GAAACCATGCTTCGCACGACGAGGT
LOC_Os12g41570
OsAffx.7856.1.S1_at--198--8011Chr12:25696505..25696529 (25 bp)
GGAGGAGGCAACGAAACCGCGTCCT
LOC_Os12g41570
OsAffx.7856.1.S1_at--816--5851Chr12:25696391..25696415 (25 bp)
GAGCCTAGGTGCGAGAACCTGCTCA
LOC_Os12g41570
OsAffx.7856.1.S1_at--637--5971Chr12:25696379..25696403 (25 bp)
GAGAACCTGCTCACATCCGTGTATG
LOC_Os12g41570
OsAffx.7856.1.S1_at--622--4831Chr12:25696371..25696395 (25 bp)
GCTCACATCCGTGTATGGCGATACA
LOC_Os12g41570
OsAffx.7856.1.S1_at--590--2611Chr12:25696244..25696268 (25 bp)
AACGCCACGTGCATCCCTATGCAGA
LOC_Os12g41570
OsAffx.7856.1.S1_at--1082--611Chr12:25696226..25696250 (25 bp)
ATGCAGACCCCGAGCGGCAACTGGG
LOC_Os12g41570
OsAffx.7856.1.S1_at--1059--4391Chr12:25696201..25696225 (25 bp)
GCCACCGGTGCGAGTGCCTGCCATG
LOC_Os12g41570
OsAffx.7856.1.S1_at--1069--4611Chr12:25696150..25696174 (25 bp)
GCGAGGGATGCTATGCTGGTATCAA
LOC_Os12g41570
OsAffx.7856.1.S1_at--659--9071Chr12:25696142..25696166 (25 bp)
TGCTATGCTGGTATCAATTGTGAAT
LOC_Os12g41570
Target Sequence 
CGGAACGCGACGAGCAGCGACTGCAGCGTCCCCGTCGAAACCATGCTTCGCACGACGAGGTGCAGCGGTGGAGGAGGCAA
CGAAACCGCGTCCTCCTCCCTGACGTGCATCGCCTCGCTCTCGCCGGCGACGCCGGCGGAGAGGGGTTTGGGCGGCCTGT
TCGCGCAGTGGGAGAAGGTGGAGGAGCCTAGGTGCGAGAACCTGCTCACATCCGTGTATGGCGATACACGGGAAGGGGTG
TTCTCGCTGGAGTTCGCGGCGGCGGAGATGGGGTGGTGGGTCAACGGGAGCTGCGGCGGCGGCGTCGACGACCTCGGGCG
GTGCGCGGCGAACGCCACGTGCATCCCTATGCAGACCCCGAGCGGCAACTGGGGCCACCGGTGCGAGTGCCTGCCATGGA
TGGCCGGCGACGGGTTCGCCGCCGGCGAGGGATGCTATGCTGGTATCAATTGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis