Browse Element(s) Details


Os.8281.1.S1_at

Description gb:AK101303.1
DB_XREF= gi:32986512
TID=Os.8281.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033K21, full insert sequence.
FL= gb:AK101303.1 gb:AK058469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4162011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41560Os.49172.1.S1_at11/1112+25694108..25695760expressed protein
LOC_Os12g41570OsAffx.7856.1.S1_at11/1112+25696107..25696979hypothetical protein
LOC_Os12g41580OsAffx.32137.1.S1_at11/1112+25702659..25704244hypothetical protein
LOC_Os12g41590Os.9887.1.S1_at11/1112+25704406..25707500oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g41600Os.28213.1.S1_at11/1112+25710404..25712018expressed protein
LOC_Os12g41610NANA12+25717312..25717683hypothetical protein
LOC_Os12g41620Os.8281.1.S1_at11/1112+25718496..25724633transducin family protein, putative, expressed
LOC_Os12g41630OsAffx.32138.1.S1_at11/1112+25724952..25726005F-box domain containing protein, expressed
LOC_Os12g41634NANA12+25730008..25730244hypothetical protein
LOC_Os12g41640OsAffx.32139.1.S1_at11/1112+25731346..25731873hypothetical protein
LOC_Os12g41650Os.11675.1.A1_at11/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.13917.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.29544.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41660NANA12+25747579..25748688hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8281.1.S1_at--676--4451Chr12:25724057..25724081 (25 bp)
GCCTCTCACAAAGTTATGTCCTGCA
LOC_Os12g41620
Os.8281.1.S1_at--679--771Chr12:25724072..25724096 (25 bp)
ATGTCCTGCATTCTTGGCATCATTG
LOC_Os12g41620
Os.8281.1.S1_at--866--2851Chr12:25724129..25724153 (25 bp)
AAGTGCCGAAGTTTTGTCCCGTCAT
LOC_Os12g41620
Os.8281.1.S1_at--35--2931Chr12:25724164..25724188 (25 bp)
AAGGAACCCTGCTAGTTACAAATGG
LOC_Os12g41620
Os.8281.1.S1_at--1089--2271Chr12:25724200..25724224 (25 bp)
AAATCCTTATGACTAGTGCTGCCCG
LOC_Os12g41620
Os.8281.1.S1_at--164--5411Chr12:25724224..25724248 (25 bp)
GAAGCTCGTCCAATACTGCTGAAGC
LOC_Os12g41620
Os.8281.1.S1_at--629--8831Chr12:25724262..25724286 (25 bp)
TGATTATCTGTCAGCTCAGCTCACA
LOC_Os12g41620
Os.8281.1.S1_at--668--751Chr12:25724452..25724476 (25 bp)
ATGTAACGCGCTAAGATATCCAGTA
LOC_Os12g41620
Os.8281.1.S1_at--413--6351Chr12:25724492..25724516 (25 bp)
GATGCTGTTTTACTGACTCTGAATG
LOC_Os12g41620
Os.8281.1.S1_at--408--5531Chr12:25724541..25724565 (25 bp)
GAAAACTCGATGCTTCTTTCAGAGT
LOC_Os12g41620
Os.8281.1.S1_at--515--10531Chr12:25724566..25724590 (25 bp)
TTCAGTTGTCTGTTGCTTGCATACA
LOC_Os12g41620
Target Sequence 
GCCTCTCACAAAGTTATGTCCTGCATTCTTGGCATCATTGCTTGAGAAGAGACCAGTTGCAAATGAGTGAGAAAGTGCCG
AAGTTTTGTCCCGTCATACAATGCAACAAGGAACCCTGCTAGTTACAAATGGCATTGCACATGAAATCCTTATGACTAGT
GCTGCCCGAAGCTCGTCCAATACTGCTGAAGCTGGTTGTGGGCATTGATTATCTGTCAGCTCAGCTCACAAGAGAACACA
TGCGATGATGGCTACAGCAACGCTGTTGGGTGAATGAGCCACCCTACCTCTTTTTGTAGGTGATATCTAGTGATCTATCT
TCAGATCCTAGCAAATTTTGTTTCCATAGGCTAATCTGTAATTCTGATAGCAAAAACTAGCTCTTTTTGGTGAAAATGTA
ACGCGCTAAGATATCCAGTAACACGGTGAGTGAATGATGCTGTTTTACTGACTCTGAATGAAGTGTGTGTTGATCTGGTA
AACTGAAAACTCGATGCTTCTTTCAGAGTTTCAGTTGTCTGTTGCTTGCATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis