Browse Element(s) Details


Os.28213.1.S1_at

Description gb:AK111050.1
DB_XREF= gi:32996259
TID=Os.28213.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-C07, full insert sequence.
FL= gb:AK111050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4160011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41530OsAffx.20079.1.S1_x_at1/1112+25685019..25687067Protein kinase domain containing protein
LOC_Os12g41540OsAffx.20079.1.S1_x_at11/1112+25689204..25691635lectin protein kinase, putative, expressed
LOC_Os12g41550Os.55384.1.S1_s_at11/1112+25692632..25693149expressed protein
LOC_Os12g41560Os.49172.1.S1_at11/1112+25694108..25695760expressed protein
LOC_Os12g41570OsAffx.7856.1.S1_at11/1112+25696107..25696979hypothetical protein
LOC_Os12g41580OsAffx.32137.1.S1_at11/1112+25702659..25704244hypothetical protein
LOC_Os12g41590Os.9887.1.S1_at11/1112+25704406..25707500oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g41600Os.28213.1.S1_at11/1112+25710404..25712018expressed protein
LOC_Os12g41610NANA12+25717312..25717683hypothetical protein
LOC_Os12g41620Os.8281.1.S1_at11/1112+25718496..25724633transducin family protein, putative, expressed
LOC_Os12g41630OsAffx.32138.1.S1_at11/1112+25724952..25726005F-box domain containing protein, expressed
LOC_Os12g41634NANA12+25730008..25730244hypothetical protein
LOC_Os12g41640OsAffx.32139.1.S1_at11/1112+25731346..25731873hypothetical protein
LOC_Os12g41650Os.11675.1.A1_at11/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.13917.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.29544.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28213.1.S1_at--632--5851Chr12:25710860..25710884 (25 bp)
GACCAAGCCGATCGCCGTCAACTGC
LOC_Os12g41600
Os.28213.1.S1_at--171--8911Chr12:25710744..25710768 (25 bp)
TGAGAGAGCTCGCCCAGCTCTACGC
LOC_Os12g41600
Os.28213.1.S1_at--288--1591Chr12:25710729..25710753 (25 bp)
AGCTCTACGCCTACTAGCTGCTGCT
LOC_Os12g41600
Os.28213.1.S1_at--933--6011Chr12:25710683..25710707 (25 bp)
GAGAGATCAGCTTAATCAACACCAT
LOC_Os12g41600
Os.28213.1.S1_at--778--3351Chr12:25710664..25710688 (25 bp)
CACCATCAATGTTAGTTAAGTACTC
LOC_Os12g41600
Os.28213.1.S1_at--12--4671Chr12:25710628..25710652 (25 bp)
GCGTGCATGCATGTTGTTAGTAATT
LOC_Os12g41600
Os.28213.1.S1_at--569--9511Chr12:25710524..25710548 (25 bp)
TCTAAAAGATTATTCGGCGCGATGA
LOC_Os12g41600
Os.28213.1.S1_at--434--151Chr12:25710516..25710540 (25 bp)
ATTATTCGGCGCGATGAAGAAGATG
LOC_Os12g41600
Os.28213.1.S1_at--978--2791Chr12:25710497..25710521 (25 bp)
AAGATGATTTGATGCATGTACATGC
LOC_Os12g41600
Os.28213.1.S1_at--1141--5471Chr12:25710462..25710486 (25 bp)
GAACATGGTGTAGTTATTATGGTTT
LOC_Os12g41600
Os.28213.1.S1_at--753--10071Chr12:25710445..25710469 (25 bp)
TATGGTTTATGATGTTTTTCACAAA
LOC_Os12g41600
Target Sequence 
GACCAAGCCGATCGCCGTCAACTGCGANGTCGTGCTGTTCGACCACCTNCTGTGGATGCTGGACAACGCCGTCGACCTCC
GCGCCGGCGGCGACGGCGACGACGACGACGCCGCCATGAGAGAGCTCGCCCAGCTCTACGCCTACTAGCTGCTGCTGCTG
CTGCTGCTGATCATGGAGAGAGATCAGCTTAATCAACACCATCAATGTTAGTTAAGTACTCGATCNGGTACATGCGTGCA
TGCATGTTGTTAGTAATTNGTTTTGATTAGTTCTTAAAATTAACTNGCCTTGATTGATTTCATTTTTAATTTTGATNGTT
CATTTGGTTCTTGCNGCGAGATCTAAAAGATTATTCGGCGCGATGAAGAAGATGATTTGATGCATGTACATGCAAAATGT
ATGGAACATGGTGTAGTTATTATGGTTTATGATGTTTTTCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis