Browse Element(s) Details


OsAffx.32138.1.S1_at

Description tigr:9640.m04078
TID=OsAffx.32138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4163011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41580OsAffx.32137.1.S1_at11/1112+25702659..25704244hypothetical protein
LOC_Os12g41590Os.9887.1.S1_at11/1112+25704406..25707500oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g41600Os.28213.1.S1_at11/1112+25710404..25712018expressed protein
LOC_Os12g41610NANA12+25717312..25717683hypothetical protein
LOC_Os12g41620Os.8281.1.S1_at11/1112+25718496..25724633transducin family protein, putative, expressed
LOC_Os12g41630OsAffx.32138.1.S1_at11/1112+25724952..25726005F-box domain containing protein, expressed
LOC_Os12g41634NANA12+25730008..25730244hypothetical protein
LOC_Os12g41640OsAffx.32139.1.S1_at11/1112+25731346..25731873hypothetical protein
LOC_Os12g41650Os.11675.1.A1_at11/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.13917.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.29544.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41660NANA12+25747579..25748688hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32138.1.S1_at--438--3891Chr12:25725621..25725645 (25 bp)
CTGGACCTCGTGTCGCTCCGGTGCA
LOC_Os12g41630
OsAffx.32138.1.S1_at--1014--1731Chr12:25725617..25725641 (25 bp)
ACCTCGTGTCGCTCCGGTGCACGGA
LOC_Os12g41630
OsAffx.32138.1.S1_at--275--1511Chr12:25725509..25725533 (25 bp)
AGCACCTGGAGCTCGAGCACAGGCC
LOC_Os12g41630
OsAffx.32138.1.S1_at--1130--4331Chr12:25725441..25725465 (25 bp)
CCAGGCTTCTCCAGCCTCAAGATGG
LOC_Os12g41630
OsAffx.32138.1.S1_at--484--10591Chr12:25725435..25725459 (25 bp)
TTCTCCAGCCTCAAGATGGCCGGCG
LOC_Os12g41630
OsAffx.32138.1.S1_at--1123--9351Chr12:25725347..25725371 (25 bp)
TCGACGGCTGCTACCTGCCAAGGCA
LOC_Os12g41630
OsAffx.32138.1.S1_at--611--4771Chr12:25725341..25725365 (25 bp)
GCTGCTACCTGCCAAGGCACGAGCT
LOC_Os12g41630
OsAffx.32138.1.S1_at--791--7231Chr12:25725283..25725307 (25 bp)
GTCGCTGAGCGCGAAGCACTGCGTG
LOC_Os12g41630
OsAffx.32138.1.S1_at--759--9351Chr12:25725179..25725203 (25 bp)
TCGACAAGTTTGACCAGCGTGACGT
LOC_Os12g41630
OsAffx.32138.1.S1_at--325--3231Chr12:25725175..25725199 (25 bp)
CAAGTTTGACCAGCGTGACGTGGAC
LOC_Os12g41630
OsAffx.32138.1.S1_at--447--10751Chr12:25725170..25725194 (25 bp)
TTGACCAGCGTGACGTGGACGGCCT
LOC_Os12g41630
Target Sequence 
CTGGACCTCGTGTCGCTCCGGTGCACGGAGCTGAGGAGGGTCGCCCTCCCGGCGCTGTCCGCCGCCGACGACGCGCGGCT
GCCCGGCCTCGTCGCGCGGTGGCGCCGCCTCGAGCACCTGGAGCTCGAGCACAGGCCGGCGTCGTTCCCGGCGACGGCGG
CGCGCGTCGGCGCCGGTTGCCCAGGCTTCTCCAGCCTCAAGATGGCCGGCGCCATCCGCGACGTGGACGCCGCGGCCATG
GCGGCGTCGCTGCCGCGCCTCAAGCGCCTCTGCCTCGACGGCTGCTACCTGCCAAGGCACGAGCTCCTCGCCGTCATCCA
TGGCTGCCTCGAGCTGGAGTCGCTGAGCGCGAAGCACTGCGTGGGGTTCGACGAGGGAGACGAGGAGGTGGCGAGGGAGG
CCGCCATGATCGGGAGGCTCGAGGTTGGAGGGTCGAGATTGGTCGACAAGTTTGACCAGCGTGACGTGGACGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis