Browse Element(s) Details


Os.9468.2.A2_at

Description gb:AK110310.1
DB_XREF= gi:32995519
TID=Os.9468.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-164-B04, full insert sequence.
FL= gb:AK110310.1 gb:AK107367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4149011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41450Os.54788.1.S1_at11/1112+25644266..25646033F-box domain containing protein, expressed
LOC_Os12g41460OsAffx.32135.1.S1_at11/1112+25654058..25657610hypothetical protein
LOC_Os12g41460Os.54788.1.S1_at2/1112+25654058..25657610hypothetical protein
LOC_Os12g41470OsAffx.20076.1.S1_at11/1112+25658742..25659274hypothetical protein
LOC_Os12g41480NANA12+25661287..25661855hypothetical protein
LOC_Os12g41490Os.9468.2.A1_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490Os.9468.2.A2_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490OsAffx.20077.1.S1_x_at1/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41500Os.9468.1.S1_at11/1112+25668463..25672910thiosulfate sulfurtransferase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_x_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41520OsAffx.20078.1.S1_at10/1112+25679616..25680740receptor-like protein kinase, putative
LOC_Os12g41530OsAffx.20079.1.S1_x_at1/1112+25685019..25687067Protein kinase domain containing protein
LOC_Os12g41540OsAffx.20079.1.S1_x_at11/1112+25689204..25691635lectin protein kinase, putative, expressed
LOC_Os12g41550Os.55384.1.S1_s_at11/1112+25692632..25693149expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9468.2.A2_at--665--1111Chr12:25668479..25668503 (25 bp)
AGTGTTCTCATTTATTATTGCCCCA
LOC_Os12g41490
Os.9468.2.A2_at--661--5571Chr12:25668528..25668552 (25 bp)
GAAAGGTAGATCAACAGCTCATAAT
LOC_Os12g41490
Os.9468.2.A2_at--731--3391Chr12:25668542..25668566 (25 bp)
CAGCTCATAATAATTCACAGTGTAT
LOC_Os12g41490
Os.9468.2.A2_at--789--3311Chr12:25668557..25668581 (25 bp)
CACAGTGTATGTCTATTTTCAAAAC
LOC_Os12g41490
Os.9468.2.A2_at--499--9211Chr12:25668646..25668670 (25 bp)
TCCAATCTCCTTTGCTTTCTTCCTT
LOC_Os12g41490
Os.9468.2.A2_at--557--8591Chr12:25668731..25668755 (25 bp)
TGGTACTAATTAAGCAGCAGTGGCA
LOC_Os12g41490
Os.9468.2.A2_at--572--10431Chr12:25668857..25668881 (25 bp)
TTATGCGACGTAATGTAACAATTGC
LOC_Os12g41490
Os.9468.2.A2_at--753--5111Chr12:25668880..25668904 (25 bp)
GCAAAGTAAATCTTGTGAACTTCCA
LOC_Os12g41490
Os.9468.2.A2_at--582--8971Chr12:25668895..25668919 (25 bp)
TGAACTTCCAAGTCACAGGTAGTCT
LOC_Os12g41490
Os.9468.2.A2_at--201--1171Chr12:25668905..25668929 (25 bp)
AGTCACAGGTAGTCTTACCAGAGCT
LOC_Os12g41490
Os.9468.2.A2_at--526--5911Chr12:25668925..25668949 (25 bp)
GAGCTAATATACATGCTGTCACACC
LOC_Os12g41490
Target Sequence 
AGTGTTCTCATTTATTATTGCCCCANGCCATCATATAAAAGGGACTTCAGAAAGGTAGATCAACAGCTCATAATAATTCA
CAGTGTATGTCTATTTTCAAAACCATTTACAACGAAAAGGCCNGTCTNAATGGCNGTCCCTTCCCCCCAANCTANGCCCA
GCCGACCTCTCCAATCTCCTTTGCTTTCTTCCTTCCATNGGACCATTCACGGTNCAGGGGNANAGTNATAATCAAGNAGT
NCTCCAANAGANTTGTAACNTGGTACTAATTAAGCAGCAGTGGCANACNTGGNAGTGTCAGNGNATGGGCTCCCCATTCA
GTNCCATGATCCATCATATACANGNGAACNTCGGTTNTNNNNNNGNGNTGGAGGCCCTAAGAAGAAAGCATAGGTTATGC
GACGTAATGTAACAATTGCAAAGTAAATCTTGTGAACTTCCAAGTCACAGGTAGTCTTACCAGAGCTAATATACATGCTG
TCACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9468.2.A2_at     

Putative homologies in rice

Putative homologies in arabidopsis