Browse Element(s) Details


OsAffx.20117.1.S1_s_at

Description tigr:9640.m04368
TID=OsAffx.20117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to eukaryotic protein kinase domains
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4432011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44330Os.17376.2.S1_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44330Os.17376.2.S1_x_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20117.1.S1_s_at--231--4111Chr12:27442972..27442996 (25 bp)
CGAAGCTGATGAGCCCGGAGCAGTC
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--1105--4711Chr12:27443105..27443129 (25 bp)
GCTGGAGATCGTGCGCGGCAGGAAG
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--1128--2731Chr12:27443127..27443151 (25 bp)
AAGAACTGCAGGTCGGGCAAGGGCA
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--557--6231Chr12:27443195..27443219 (25 bp)
GATGGCGCTAGAGCTGCACGAGCAA
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--1116--1591Chr12:27443206..27443230 (25 bp)
AGCTGCACGAGCAAGGGCAGTACGA
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--182--5011Chr12:27443371..27443395 (25 bp)
GCATGGAGGCCGGAGTTCCCAGGAC
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--440--3951Chr12:27443381..27443405 (25 bp)
CGGAGTTCCCAGGACGGAGCTGCTC
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--926--10631Chr12:27443386..27443410 (25 bp)
TTCCCAGGACGGAGCTGCTCGACTA
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--95--9091Chr12:27443401..27443425 (25 bp)
TGCTCGACTACCTGCGCTTGTACGG
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--1128--2011Chr12:27443407..27443431 (25 bp)
ACTACCTGCGCTTGTACGGCCGCGG
LOC_Os12g44320
OsAffx.20117.1.S1_s_at--548--8151Chr12:27443467..27443491 (25 bp)
GGAAAGGCGGCTCCGACTTCACCAG
LOC_Os12g44320
Target Sequence 
CGAAGCTGATGAGCCCGGAGCAGTCGGGGCTCTTCACCACCATGCGCGGCACCCGCGGGTACCTGGCGCCGGAGTGGCTC
ACCAACGCGCCCATCACCGACAAGGCCGACGTGTACAGCTTCGGCATGGTGCTGCTGGAGATCGTGCGCGGCAGGAAGAA
CTGCAGGTCGGGCAAGGGCAGCGGCGGCGAGGCTTCGTCGGACTCGGACGGCTACTTCCCGGCGATGGCGCTAGAGCTGC
ACGAGCAAGGGCAGTACGAGGCGGTGGTGGACCAGCGGCTGGAAGGGAGGGCGGACGTGGCGCAGGTGGAGCGGGTGGTG
CGCGTGGCGCTCTGCTGCCTTCACGAGGACGCGGCGCTGCGGCCGGCCATGACGACGGTGTCCGCCATGCTCGACGGCAG
CATGGAGGCCGGAGTTCCCAGGACGGAGCTGCTCGACTACCTGCGCTTGTACGGCCGCGGCCTGGTCGACGTCCGCTCCG
GCCTCCATGCTGCGGGGAAAGGCGGCTCCGACTTCACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20117.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis