Browse Element(s) Details


OsAffx.20168.1.S1_at

Description tigr:9638.m03535
TID=OsAffx.20168.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative peroxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3916011/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39140OsAffx.18575.1.S1_x_at11/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140Os.39583.1.A1_at10/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140OsAffx.23696.1.S1_x_at1/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39150Os.24307.1.S1_at11/1110+20563883..20565534expressed protein
LOC_Os10g39160OsAffx.20168.1.S1_at11/1110+20566022..20567148Peroxidase family protein
LOC_Os10g39170Os.5099.1.S1_at11/1110+20570460..20572645Peroxidase family protein, expressed
LOC_Os10g39190OsAffx.30718.1.S1_x_at11/1110+20586477..20587415B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20168.1.S1_at--441--4131Chr10:20566479..20566499 (21 bp)
CGCGACAGCGTCAGGGTCATGACCG
LOC_Os10g39160
OsAffx.20168.1.S1_at--217--671Chr10:20566602..20566624 (23 bp)
ATGACCGGCGGCTACAAGTACGAGG
LOC_Os10g39160
OsAffx.20168.1.S1_at--151--4111Chr10:20566688..20566712 (25 bp)
CGAAGCAGCGGAACGTGGACCAGCT
LOC_Os10g39160
OsAffx.20168.1.S1_at--485--8471Chr10:20566712..20566736 (25 bp)
TGGCGCGGTACTTCACCAGCAAGGG
LOC_Os10g39160
OsAffx.20168.1.S1_at--165--1491Chr10:20566729..20566753 (25 bp)
AGCAAGGGCCTGACCGTGGACGACA
LOC_Os10g39160
OsAffx.20168.1.S1_at--151--1051Chr10:20566792..20566816 (25 bp)
AGGTGCGGCACGTTCGGGTACAGGC
LOC_Os10g39160
OsAffx.20168.1.S1_at--253--2611Chr10:20566858..20566882 (25 bp)
AACGCGCTGAGGAAGCAGTGCAACT
LOC_Os10g39160
OsAffx.20168.1.S1_at--1157--1111Chr10:20566874..20566898 (25 bp)
AGTGCAACTACAAGTCCAACAACGT
LOC_Os10g39160
OsAffx.20168.1.S1_at--1036--8091Chr10:20567006..20567030 (25 bp)
GGACCTTGGCGAGGGTCACCCAGCT
LOC_Os10g39160
OsAffx.20168.1.S1_at--711--8231Chr10:20567035..20567059 (25 bp)
GGCAACCAGGCGCTGTTCACGAGCA
LOC_Os10g39160
OsAffx.20168.1.S1_at--959--891Chr10:20567042..20567066 (25 bp)
AGGCGCTGTTCACGAGCAGCTTCGC
LOC_Os10g39160
Target Sequence 
CGCGACAGCGTCAGGGTCATGACCGGCGGCTACAAGTACGAGGTGCCCGGCGGGAGGCCGGACGGGACGGTGTCGCGGGC
GAGCATGACCGGCGACCTCCCGCCGCCGAAGCAGCGGAACGTGGACCAGCTGGCGCGGTACTTCACCAGCAAGGGCCTGA
CCGTGGACGACATGGTGGTGCTCTCCGGCGCGCACACGCTCGGCGTCGCCAGGTGCGGCACGTTCGGGTACAGGCTGACG
AGCGACGGCGACAAGGGCATGGACGCCGCGTTCCGGAACGCGCTGAGGAAGCAGTGCAACTACAAGTCCAACAACGTCGC
CGCCCTCGACGCCGGCAGCGAGTACGGCTTCGACACCAGCTACTACGCCAACGTGCTCGCCAACCGCACCGTGCTCGAGT
CCGACGCCGCGCTCAACTCGCCCAGGACCTTGGCGAGGGTCACCCAGCTCAGGGGCAACCAGGCGCTGTTCACGAGCAGC
TTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis