Browse Element(s) Details


OsAffx.2020.1.S1_at

Description tigr:9629.m01670
TID=OsAffx.2020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1676011/11hypothetical protein
LOC_Os01g579741/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16730OsAffx.26706.1.S1_x_at9/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.3.S1_x_at8/111+9493555..9499714hypothetical protein
LOC_Os01g16730OsAffx.26706.1.S1_at1/111+9493555..9499714hypothetical protein
LOC_Os01g16740OsAffx.28514.4.S1_s_at11/111+9500034..9506892transposon protein, putative, unclassified
LOC_Os01g16740OsAffx.28514.2.S1_x_at10/111+9500034..9506892transposon protein, putative, unclassified
LOC_Os01g16750Os.56223.1.S1_at3/111+9509763..9511880Flavin-binding monooxygenase-like family protein
LOC_Os01g16760OsAffx.2020.1.S1_at11/111+9516479..9517285hypothetical protein
LOC_Os01g16770NANA1+9522965..9523762Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g16780NANA1+9529939..9533231retrotransposon protein, putative, unclassified, expressed
LOC_Os01g16790NANA1+9534005..9540014retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2020.1.S1_at--38--4876Chr10:20140454..20140478 (25 bp)
GTTCGCGGAGAGAAAACCAAATTAG
NONE
OsAffx.2020.1.S1_at--764--3111Chr01:9517171..9517195 (25 bp)
CAAATTAGTAAGAGAAACCCACGCT
LOC_Os01g16760
OsAffx.2020.1.S1_at--384--5551Chr01:9517163..9517182 (20 bp)
GAAACCCACGCTTAGGAAAGCCTGC
LOC_Os01g16760
OsAffx.2020.1.S1_at--1022--1831Chr01:9516845..9517175 (25 bp)
ACGCTTAGGAAAGCCTGCGCGCGGC
LOC_Os01g16760
OsAffx.2020.1.S1_at--1132--6131Chr01:9516735..9516759 (25 bp)
GAGGTGCAACCCTACCGGCGACCGG
LOC_Os01g16760
OsAffx.2020.1.S1_at--780--7051Chr01:9516613..9516637 (25 bp)
GTAATGGCCGCTACTCGGGCGGCAC
LOC_Os01g16760
OsAffx.2020.1.S1_at--563--9911Chr01:9516602..9516626 (25 bp)
TACTCGGGCGGCACCATGGCAAGCG
LOC_Os01g16760
OsAffx.2020.1.S1_at--649--8251Chr01:9516593..9516617 (25 bp)
GGCACCATGGCAAGCGCATCGAGTT
LOC_Os01g16760
OsAffx.2020.1.S1_at--91--5171Chr01:9516584..9516608 (25 bp)
GCAAGCGCATCGAGTTGCCCTAGGA
LOC_Os01g16760
OsAffx.2020.1.S1_at--814--3511Chr01:9516577..9516601 (25 bp)
CATCGAGTTGCCCTAGGACCTAGGG
LOC_Os01g16760
OsAffx.2020.1.S1_at--120--4611Chr01:9516511..9516535 (25 bp)
GCGAGCTGGCGAGCCTTGGCCCTTA
LOC_Os01g16760
Target Sequence 
GTTCGCGGAGAGAAAACCAAATTAGTAAGAGAAACCCACGCTTAGGAAAGCCTGCGCGCGGCGGCGATGCGGGGGCGGCC
GAGCACGAGCAGGCAGAGGCGGTGCGGCACGCGACAGCGTTGAACGTGGCGGCGTCCCTCGGAGGCGGAGGTGCAACCCT
ACCGGCGACCGGTAGGCGCGCTCGGTGGAAGCGGGCACCGGGGCCGCGCCATGGCGCACGAACGGCGACAAAATCGGGGT
TCCGCGCGTGCGAGGCGGTGGAGAGGAGGGTAATGGCCGCTACTCGGGCGGCACCATGGCAAGCGCATCGAGTTGCCCTA
GGACCTAGGGCGGTGGCGGTGGCGGTGGCGGCGGCGGCTGTGGCGGCGGCGGCGAGCTGGCGAGCCTTGGCCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis