Browse Element(s) Details


OsAffx.20208.1.S1_at

Description gb:NM_197298.1
DB_XREF= gi:37535955
TID=OsAffx.20208.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0005K07.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3666011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36620Os.46597.2.S1_at7/1110+19264676..19265368expressed protein
LOC_Os10g36634OsAffx.30691.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36634OsAffx.20209.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36650Os.19742.1.S1_at11/1110+19277241..19281153Actin-2, putative, expressed
LOC_Os10g36660OsAffx.20208.1.S1_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36660OsAffx.20208.1.S1_x_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36670OsAffx.18540.1.S1_at11/1110+19285544..19286365expressed protein
LOC_Os10g36670OsAffx.18540.1.S1_x_at11/1110+19285544..19286365expressed protein
LOC_Os10g36680OsAffx.20207.1.S1_at11/1110+19287802..19288929membrane associated salt-inducible protein, putative
LOC_Os10g36690Os.5030.1.S1_at11/1110+19291938..19296510dehydration-responsive family protein, putative, expressed
LOC_Os10g36699NANA10+19301947..19303104expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20208.1.S1_at--1003--3791Chr10:19283506..19283530 (25 bp)
CTCGCCGCTATCCAAAAACTGGCTG
LOC_Os10g36660
OsAffx.20208.1.S1_at--78--4531Chr10:19283509..19283533 (25 bp)
GCCGCTATCCAAAAACTGGCTGGCG
LOC_Os10g36660
OsAffx.20208.1.S1_at--847--3271Chr10:19283518..19283542 (25 bp)
CAAAAACTGGCTGGCGAGGCTGCAC
LOC_Os10g36660
OsAffx.20208.1.S1_at--390--2391Chr10:19283521..19283545 (25 bp)
AAACTGGCTGGCGAGGCTGCACCTG
LOC_Os10g36660
OsAffx.20208.1.S1_at--801--911Chr10:19283534..19283558 (25 bp)
AGGCTGCACCTGCACGTCGTACCGG
LOC_Os10g36660
OsAffx.20208.1.S1_at--485--7212Chr10:19283549..19283573 (25 bp)
GTCGTACCGGCGTCCAAGAAGGTGT
LOC_Os10g36660
OsAffx.20208.1.S1_at--857--6971Chr10:19283552..19283576 (25 bp)
GTACCGGCGTCCAAGAAGGTGTCGC
LOC_Os10g36660
OsAffx.20208.1.S1_at--234--6031Chr10:19283603..19283627 (25 bp)
GAGAGGCTGGAGGAATGCATTGGCG
LOC_Os10g36660
OsAffx.20208.1.S1_at--105--3011Chr10:19283616..19283640 (25 bp)
AATGCATTGGCGAGCTGGAGAGCGG
LOC_Os10g36660
OsAffx.20208.1.S1_at--576--7411Chr10:19283651..19283675 (25 bp)
GTGTTCAGGCGGCTGCTGCAAACAA
LOC_Os10g36660
OsAffx.20208.1.S1_at--483--6751Chr10:19283653..19283677 (25 bp)
GTTCAGGCGGCTGCTGCAAACAAGA
LOC_Os10g36660
Target Sequence 
CTCGCCGCTATCCAAAAACTGGCTGGCGAGGCTGCACCTGCACGTCGTACCGGCGTCCAAGAAGGTGTCGCCGGCGACGG
CGACGGCGGCGGCATTGGAGAGGCTGGAGGAATGCATTGGCGAGCTGGAGAGCGGGAGCGAGAAGGTGTTCAGGCGGCTG
CTGCAAACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis