Browse Element(s) Details


OsAffx.20211.1.S1_at

Description tigr:9638.m03260
TID=OsAffx.20211.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3658010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36550Os.26728.1.S1_a_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_x_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_x_at10/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_at1/1110+19225446..19228841expressed protein
LOC_Os10g36580OsAffx.20211.1.S1_at10/1110+19239001..19239689hypothetical protein
LOC_Os10g36590OsAffx.15595.1.S1_at1/1110+19245240..19248197retrotransposon, putative, centromere-specific
LOC_Os10g36600OsAffx.10957.1.S1_x_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36600OsAffx.10957.1.S1_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36610NANA10+19253665..19253934hypothetical protein
LOC_Os10g36620Os.46597.2.S1_at7/1110+19264676..19265368expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20211.1.S1_at--1134--871Chr10:19239445..19239469 (25 bp)
AGGCCGTCGAGTACCAGCAGCAGGT
LOC_Os10g36580
OsAffx.20211.1.S1_at--800--3991Chr10:19239441..19239465 (25 bp)
CGTCGAGTACCAGCAGCAGGTCAGG
LOC_Os10g36580
OsAffx.20211.1.S1_at--492--1531Chr10:19239427..19239451 (25 bp)
AGCAGGTCAGGGAGCTCTCCGACCG
LOC_Os10g36580
OsAffx.20211.1.S1_at--720--9271NONE
TCCGGTTTCCAAAGGCCAAAGCTAT
NONE
OsAffx.20211.1.S1_at--550--2931Chr10:19239105..19239129 (25 bp)
AAGGCCAAAGCTATAATTGCCGAAA
LOC_Os10g36580
OsAffx.20211.1.S1_at--978--4731Chr10:19239096..19239120 (25 bp)
GCTATAATTGCCGAAAGTAAACAGA
LOC_Os10g36580
OsAffx.20211.1.S1_at--296--7031Chr10:19239080..19239104 (25 bp)
GTAAACAGAGGCAGGACCTCTTCGT
LOC_Os10g36580
OsAffx.20211.1.S1_at--284--3651Chr10:19239061..19239085 (25 bp)
CTTCGTCGACTTTGGATGTCTGGCA
LOC_Os10g36580
OsAffx.20211.1.S1_at--926--8551Chr10:19239049..19239073 (25 bp)
TGGATGTCTGGCAAAAGCTCGACTT
LOC_Os10g36580
OsAffx.20211.1.S1_at--723--7171Chr10:19239044..19239068 (25 bp)
GTCTGGCAAAAGCTCGACTTGGATT
LOC_Os10g36580
OsAffx.20211.1.S1_at--531--2691Chr10:19239035..19239059 (25 bp)
AAGCTCGACTTGGATTAAGGTTGAA
LOC_Os10g36580
Target Sequence 
AGGCCGTCGAGTACCAGCAGCAGGTCAGGGAGCTCTCCGACCGCCTCGCCTTCGCCGACGGCGTCCTCCGGTTTCCAAAG
GCCAAAGCTATAATTGCCGAAAGTAAACAGAGGCAGGACCTCTTCGTCGACTTTGGATGTCTGGCAAAAGCTCGACTTGG
ATTAAGGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis