Browse Element(s) Details


Os.54568.1.S1_at

Description gb:AK105809.1
DB_XREF= gi:32991018
TID=Os.54568.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B11, full insert sequence.
FL= gb:AK105809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g365307/11MutS domain V family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36470Os.6154.1.S1_a_at11/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36470OsAffx.28284.1.S1_at3/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36490Os.17209.1.S1_at11/1110+19187274..19195752tubulin folding cofactor D, putative, expressed
LOC_Os10g36480Os.14040.1.S1_at11/1110+19195983..19198906expressed protein
LOC_Os10g36500Os.7756.2.S1_x_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.2.S1_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.1.S1_at10/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36510OsAffx.30486.1.S1_at1/1110+19204322..19206481hypothetical protein
LOC_Os10g36520Os.46807.1.S1_at11/1110+19209997..19210891expressed protein
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36550Os.26728.1.S1_a_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_x_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_x_at10/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_at1/1110+19225446..19228841expressed protein
LOC_Os10g36580OsAffx.20211.1.S1_at10/1110+19239001..19239689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000002biological_processmitochondrial genome maintenance
GO:0006298biological_processmismatch repair
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54568.1.S1_at--1019--331Chr10:19219227..19219251 (25 bp)
ATACAGTTACATTGCTTTTCTCTGC
LOC_Os10g36530
Os.54568.1.S1_at--479--2131Chr10:19219229..19219253 (25 bp)
ACAGTTACATTGCTTTTCTCTGCCG
LOC_Os10g36530
Os.54568.1.S1_at--1011--3431Chr10:19219230..19219254 (25 bp)
CAGTTACATTGCTTTTCTCTGCCGC
LOC_Os10g36530
Os.54568.1.S1_at--1028--1211Chr10:19219231..19219254 (24 bp)
AGTTACATTGCTTTTCTCTGCCGCG
LOC_Os10g36530
Os.54568.1.S1_at--675--6771NONE
GTTACATTGCTTTTCTCTGCCGCGT
NONE
Os.54568.1.S1_at--102--9891NONE
TACATTGCTTTTCTCTGCCGCGTCT
NONE
Os.54568.1.S1_at--1062--51NONE
ATTGCTTTTCTCTGCCGCGTCTCCA
NONE
Os.54568.1.S1_at--519--4651NONE
GCGTCTCCATTCTCACTGTATACAT
NONE
Os.54568.1.S1_at--378--7171Chr10:19219256..19219279 (24 bp)
GTCTCCATTCTCACTGTATACATCT
LOC_Os10g36530
Os.54568.1.S1_at--995--9491Chr10:19219256..19219280 (25 bp)
TCTCCATTCTCACTGTATACATCTA
LOC_Os10g36530
Os.54568.1.S1_at--666--3811Chr10:19219257..19219281 (25 bp)
CTCCATTCTCACTGTATACATCTAG
LOC_Os10g36530
Target Sequence 
ATACAGTTACATTGCTTTTCTCTGCCGCGTCTCCATTCTCACTGTATACATCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis