Browse Element(s) Details


Os.26728.3.S1_x_at

Description gb:NM_197288.1
DB_XREF= gi:37535935
TID=Os.26728.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26728 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0091N21.33), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3655010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36500Os.7756.2.S1_x_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.2.S1_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.1.S1_at10/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36510OsAffx.30486.1.S1_at1/1110+19204322..19206481hypothetical protein
LOC_Os10g36520Os.46807.1.S1_at11/1110+19209997..19210891expressed protein
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36550Os.26728.1.S1_a_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_x_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_x_at10/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_at1/1110+19225446..19228841expressed protein
LOC_Os10g36580OsAffx.20211.1.S1_at10/1110+19239001..19239689hypothetical protein
LOC_Os10g36590OsAffx.15595.1.S1_at1/1110+19245240..19248197retrotransposon, putative, centromere-specific
LOC_Os10g36600OsAffx.10957.1.S1_x_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36600OsAffx.10957.1.S1_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36610NANA10+19253665..19253934hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26728.3.S1_x_at--187--911Chr10:19226938..19226962 (25 bp)
AGGCGAGGTGCACAACTGCATCCAT
LOC_Os10g36550
Os.26728.3.S1_x_at--126--3051NONE
AATCCCAAGCCAACCTAATCTGATA
NONE
Os.26728.3.S1_x_at--401--6471Chr10:19227883..19227907 (25 bp)
GATAACTACGTCTCGTGCTGAGCAG
LOC_Os10g36550
Os.26728.3.S1_x_at--689--9111Chr10:19227898..19227922 (25 bp)
TGCTGAGCAGCATGATTTCCAATTC
LOC_Os10g36550
Os.26728.3.S1_x_at--319--10291Chr10:19227913..19228382 (25 bp)
TTTCCAATTCCAGATCATGACCCAG
LOC_Os10g36550
Os.26728.3.S1_x_at--957--5651Chr10:19228385..19228409 (25 bp)
GACATGAAGCTTTGGTACTACGACT
LOC_Os10g36550
Os.26728.3.S1_x_at--835--2771Chr10:19228442..19228466 (25 bp)
AAGAGCGCTAGCCTTTAGCTGAACC
LOC_Os10g36550
Os.26728.3.S1_x_at--633--9911Chr10:19228457..19228481 (25 bp)
TAGCTGAACCTTGCACTTTGGGTGC
LOC_Os10g36550
Os.26728.3.S1_x_at--1031--10831Chr10:19228474..19228498 (25 bp)
TTGGGTGCCCAAGCAAGCTGTTGCA
LOC_Os10g36550
Os.26728.3.S1_x_at--916--3511Chr10:19228731..19228755 (25 bp)
CATGAAGTGCGTTTTGTTGCCGGTT
LOC_Os10g36550
Os.26728.3.S1_x_at--839--10651Chr10:19228747..19228771 (25 bp)
TTGCCGGTTTCATATCCCCAGGAAT
LOC_Os10g36550
Target Sequence 
AGGCGAGGTGCACAACTGCATCCATCCCCTTTCGAGAGGTCCTACACCGCTGTGTCTCCAATCCCAAGCCAACCTAATCT
GATAACTACGTCTCGTGCTGAGCAGCATGATTTCCAATTCCAGATCATGACCCAGAAGACATGAAGCTTTGGTACTACGA
CTAGAGCCACTGAAACTCTAGGCTGGTATCGAAGAAGAGCGCTAGCCTTTAGCTGAACCTTGCACTTTGGGTGCCCAAGC
AAGCTGTTGCATTTGGAGGGATCAACAAAAAGTAGCTATCATCTGTAATTTGGAGTAGAAACTCTCTGGAGACAGCAGAC
ATTCCTGCAACTTCTGTCGCTCTATCCGACTAGCCTGCTTCAGCACAAGCATATTTTGTTCTGTATTTTTTTGTTTAAAA
AAAACAAGTGAAACCCTGGCTCTTCTATTTAATTATGAAAATACTGGTGCGCTCCGGCGTGCCCTTTGCAATTCATCCTT
GCTCATGAAGTGCGTTTTGTTGCCGGTTTCATATCCCCAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26728.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis