Browse Element(s) Details


Os.46807.1.S1_at

Description gb:AK110739.1
DB_XREF= gi:32995948
TID=Os.46807.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0091N21.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F06, full insert sequence.
FL= gb:AK110739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3652011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36470Os.6154.1.S1_a_at11/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36470OsAffx.28284.1.S1_at3/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36490Os.17209.1.S1_at11/1110+19187274..19195752tubulin folding cofactor D, putative, expressed
LOC_Os10g36480Os.14040.1.S1_at11/1110+19195983..19198906expressed protein
LOC_Os10g36500Os.7756.2.S1_x_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.2.S1_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.1.S1_at10/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36510OsAffx.30486.1.S1_at1/1110+19204322..19206481hypothetical protein
LOC_Os10g36520Os.46807.1.S1_at11/1110+19209997..19210891expressed protein
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36550Os.26728.1.S1_a_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_x_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_x_at10/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_at1/1110+19225446..19228841expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46807.1.S1_at--862--8171Chr10:19210568..19210592 (25 bp)
GGAACGGGATACGACGACGCCATCG
LOC_Os10g36520
Os.46807.1.S1_at--491--2111Chr10:19210486..19210510 (25 bp)
ACAGGTTCAGGCCACGCTACGACTC
LOC_Os10g36520
Os.46807.1.S1_at--308--3891Chr10:19210308..19210332 (25 bp)
CTGGGACGAGCCGTAGCGAACAGTA
LOC_Os10g36520
Os.46807.1.S1_at--750--1351Chr10:19210284..19210308 (25 bp)
AGAGACGATCATCCAACTCGCGCCA
LOC_Os10g36520
Os.46807.1.S1_at--638--9031Chr10:19210253..19210277 (25 bp)
TGCAGCAGCGTTGTGCCAAGAAACG
LOC_Os10g36520
Os.46807.1.S1_at--1038--4371Chr10:19210238..19210262 (25 bp)
CCAAGAAACGGCCATCGGAGCAATA
LOC_Os10g36520
Os.46807.1.S1_at--449--3411Chr10:19210151..19210175 (25 bp)
CAGAAATTTATATGACCACGTCGTT
LOC_Os10g36520
Os.46807.1.S1_at--632--4351Chr10:19210136..19210160 (25 bp)
CCACGTCGTTAGTTTTCTCTGTTAT
LOC_Os10g36520
Os.46807.1.S1_at--645--10171Chr10:19210114..19210138 (25 bp)
TATCACACTGGCAACATACTGCATG
LOC_Os10g36520
Os.46807.1.S1_at--849--2251Chr10:19210062..19210086 (25 bp)
AAATACTGAGTCGATGGCGTCCTCT
LOC_Os10g36520
Os.46807.1.S1_at--425--9511Chr10:19210040..19210064 (25 bp)
TCTCGTCTGCGATGTGTCATGTATA
LOC_Os10g36520
Target Sequence 
GGAACGGGATACGACGACGCCATCGCTGCCGTTGCTGACGATGCAGTCGTCGTCGTCGCTGCGCCGGCGGCGGCGACGGC
GCACAGGTTCAGGCCACGCTACGACTCCGCGGTCAGCCCGGGCGCGAAGCGGGAGCTCGAGCACGAGGCTCGCTGCGGGC
CGCGCGTCCCCGTGCGGCGGGGCTTCCCGTGGCCGGAGTGGAAGCCCAACTGCCGCCGCGAACATGGCGTCGCCGGTGCC
GGCGGCTTGGGGCGGCGTCCCTGGGACGAGCCGTAGCGAACAGTAGAGACGATCATCCAACTCGCGCCATCGCCATGCAG
CAGCGTTGTGCCAAGAAACGGCCATCGGAGCAATAAAAATTAGAGAGAAGGGCCAAATTACAAAACTTCAGGCAAACCAA
AAAGTATCAGTAATTTTCAGAAATTTATATGACCACGTCGTTAGTTTTCTCTGTTATCACACTGGCAACATACTGCATGA
TAAACGATAATTAGTTATGAAAAGAAAAATACTGAGTCGATGGCGTCCTCTCGTCTGCGATGTGTCATGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis