Browse Element(s) Details


OsAffx.20225.1.S1_x_at

Description gb:NM_197206.1
DB_XREF= gi:37535771
TID=OsAffx.20225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0078O01.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g459601/11P21 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45930Os.53820.1.S1_at11/113+25914215..25915779expressed protein
LOC_Os03g45960Os.49615.1.S1_at11/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45960OsAffx.20225.1.S1_x_at1/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45970Os.26902.1.S1_at11/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.943.1.S1_at2/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.20275.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45970Os.46805.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20225.1.S1_x_at--742--4411Chr10:18778667..18778691 (25 bp)
GCCAGGTACACGCTCGCAAGTCGCA
NONE
OsAffx.20225.1.S1_x_at--443--3471Chr10:18778665..18778689 (25 bp)
CAGGTACACGCTCGCAAGTCGCAAC
NONE
OsAffx.20225.1.S1_x_at--432--4111Chr10:18778653..18778677 (25 bp)
CGCAAGTCGCAACCCCGGCGTCATC
NONE
OsAffx.20225.1.S1_x_at--866--3932Chr10:18778638..18778662 (25 bp)
CGGCGTCATCGACGGCTTCAACGTG
NONE
OsAffx.20225.1.S1_x_at--727--1131Chr10:18778457..18778481 (25 bp)
AGTGCGAGCACCCACCGACCAAATA
NONE
OsAffx.20225.1.S1_x_at--947--3351Chr10:18778445..18778469 (25 bp)
CACCGACCAAATACTCGAGGTTCTT
NONE
OsAffx.20225.1.S1_x_at--234--3291Chr10:18778438..18778462 (25 bp)
CAAATACTCGAGGTTCTTCAGGGAC
NONE
OsAffx.20225.1.S1_x_at--1101--3071Chr10:18778436..18778460 (25 bp)
AATACTCGAGGTTCTTCAGGGACAA
NONE
OsAffx.20225.1.S1_x_at--1088--1971Chr10:18778433..18778457 (25 bp)
ACTCGAGGTTCTTCAGGGACAAGTT
NONE
OsAffx.20225.1.S1_x_at--988--9371Chr10:18778431..18778455 (25 bp)
TCGAGGTTCTTCAGGGACAAGTTCC
NONE
OsAffx.20225.1.S1_x_at--1081--6131Chr10:18778429..18778453 (25 bp)
GAGGTTCTTCAGGGACAAGTTCCCT
NONE
Target Sequence 
GCCAGGTACACGCTCGCAAGTCGCAACCCCGGCGTCATCGACGGCTTCAACGTGCCGGGGCAGTGCGAGCACCCACCGAC
CAAATACTCGAGGTTCTTCAGGGACAAGTTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20225.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis