Browse Element(s) Details


OsAffx.20285.1.S1_x_at

Description tigr:9638.m02774
TID=OsAffx.20285.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g435301/11glycosyl transferase family 2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43480Os.10062.1.S1_at10/115+25191183..25196932Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os05g43490Os.18454.2.S1_a_at11/115+25199902..25203459F-box family protein, putative, expressed
LOC_Os05g43510OsAffx.15086.1.S1_at11/115+25208048..25209745Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os05g43520Os.34745.1.A1_at11/115+25212558..25215866BSD domain containing protein, expressed
LOC_Os05g43530OsAffx.20285.2.S1_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530Os.15705.1.S1_x_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530OsAffx.20285.1.S1_x_at1/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43540Os.10504.1.S1_at11/115+25229534..25233108expressed protein
LOC_Os05g43550OsAffx.27292.1.S1_at11/115+25233838..25235136Eukaryotic aspartyl protease family protein
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20285.1.S1_x_at--494--4352Chr11:14450349..14450660 (25 bp)
CCACCGGATTGGTCCTTGCGCGGAG
NONE
OsAffx.20285.1.S1_x_at--169--7251Chr10:16485679..16485703 (25 bp)
GTCCTTGCGCGGAGGCGACAGTTCT
NONE
OsAffx.20285.1.S1_x_at--71--911Chr10:16485691..16485715 (25 bp)
AGGCGACAGTTCTGGCTCCAGCGGA
NONE
OsAffx.20285.1.S1_x_at--266--1231Chr10:16485698..16485722 (25 bp)
AGTTCTGGCTCCAGCGGAAGGGCAC
NONE
OsAffx.20285.1.S1_x_at--369--4791Chr10:16485874..16485898 (25 bp)
GCTCCTACGGCTGCATCCGAGTGTT
NONE
OsAffx.20285.1.S1_x_at--626--9051Chr10:16485885..16485909 (25 bp)
TGCATCCGAGTGTTCCTCGCCCTGT
NONE
OsAffx.20285.1.S1_x_at--795--9111Chr10:16485913..16485937 (25 bp)
TGCTGCTGCTCGCTGTCGAGTTTGC
NONE
OsAffx.20285.1.S1_x_at--123--9111Chr10:16485919..16485943 (25 bp)
TGCTCGCTGTCGAGTTTGCCGCCTA
NONE
OsAffx.20285.1.S1_x_at--1010--1751Chr10:16485958..16485982 (25 bp)
ACCTCGAGGAGGTGGCGTTGCTCCT
NONE
OsAffx.20285.1.S1_x_at--1126--10631Chr10:16485999..16486023 (25 bp)
TTCGCCGCCTCCTATGTCGGGTGGA
NONE
OsAffx.20285.1.S1_x_at--677--10113Chr10:16486011..16486035 (25 bp)
TATGTCGGGTGGATGCGCCTCCGCC
NONE
Target Sequence 
CCACCGGATTGGTCCTTGCGCGGAGGCGACAGTTCTGGCTCCAGCGGAAGGGCACGCGCGGAGGCGGCGGCTGCGGGTGT
GAACGAGCGGGCGAGGCGGCGGCCGCGAGCGCGTGCAGAGGCGGTGGCGGCGGCCGCGGGCGAGGCGGAGGCGGCGGCGG
CGGCCGCGTCGAGGGCTGGTGGGGGAGAGCATAGCGCTGCGGGTGCGCTCCTACGGCTGCATCCGAGTGTTCCTCGCCCT
GTCCCTGCTGCTGCTCGCTGTCGAGTTTGCCGCCTACCTCCAGGGGTGGCACCTCGAGGAGGTGGCGTTGCTCCTCGCCG
TCGACGGCCTCTTCGCCGCCTCCTATGTCGGGTGGATGCGCCTCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20285.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis