Browse Element(s) Details


OsAffx.20357.1.S1_at

Description tigr:9638.m02267
TID=OsAffx.20357.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2656011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein
LOC_Os10g26540OsAffx.6774.1.S1_x_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.1.S1_at8/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_x_at4/1110+13501910..13504824expressed protein
LOC_Os10g26550NANA10+13509293..13509829hypothetical protein
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26590OsAffx.6775.1.S1_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26590OsAffx.6775.1.S1_x_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26600Os.5819.1.S1_at11/1110+13535705..13537787Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os10g26610Os.5143.1.S1_at11/1110+13538758..13543896expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20357.1.S1_at--527--4971Chr10:13514868..13514892 (25 bp)
GCATCTGGGCCGAAAATCACATCTA
LOC_Os10g26560
OsAffx.20357.1.S1_at--1047--1711Chr10:13515171..13515195 (25 bp)
ACCAGGGCTTTTGATCAGTTAGTAG
LOC_Os10g26560
OsAffx.20357.1.S1_at--743--6711Chr10:13515247..13515271 (25 bp)
GTTCTAAGATACTTGCAGCTACTGG
LOC_Os10g26560
OsAffx.20357.1.S1_at--417--6451Chr10:13515275..13515299 (25 bp)
GATAATACGCCAGCACCTTGAAGGG
LOC_Os10g26560
OsAffx.20357.1.S1_at--1129--8151Chr10:13515478..13515502 (25 bp)
GGAAACGTCTAGAGTCAACATTTGA
LOC_Os10g26560
OsAffx.20357.1.S1_at--755--6151Chr10:13516067..13516091 (25 bp)
GAGGTCAACCAGCAGTTGCTCGGTT
LOC_Os10g26560
OsAffx.20357.1.S1_at--489--9091Chr10:13516083..13516107 (25 bp)
TGCTCGGTTGCAAGAACTCTGTTGA
LOC_Os10g26560
OsAffx.20357.1.S1_at--762--10731Chr10:13516113..13516137 (25 bp)
TTGAGGCTTACCATGCAGAACTTAA
LOC_Os10g26560
OsAffx.20357.1.S1_at--970--2351Chr10:13516903..13516926 (24 bp)
AAAGCCTCACACAAGAAGCTCCTTC
LOC_Os10g26560
OsAffx.20357.1.S1_at--1101--611Chr10:13516930..13516954 (25 bp)
ATGCTGAGAAGACAGTCGGCGCTCA
LOC_Os10g26560
OsAffx.20357.1.S1_at--361--4831Chr10:13516950..13516974 (25 bp)
GCTCAGCTGAGCGACGCGGAAACCA
LOC_Os10g26560
Target Sequence 
GCATCTGGGCCGAAAATCACATCTAAAAGAGGGGACGCAAGAAACAATGTCAGACAAAGAACCAGAAAAAGTCCCAGAAA
ACTACCTAACCAGGGCTTTTGATCAGTTAGTAGTGGTGCTAGGAAGGTTCCAAACCAAAATCAAGTCTGAAACAAGGAAT
AAAAGTTCTAAGATACTTGCAGCTACTGGAGAGATAATACGCCAGCACCTTGAAGGGGTTGAGGGGCAGATGCAGGCTGA
TGTGGACAAGCTGGTCAATGCAGGAAAATCTAAAAGGAAACGTCTAGAGTCAACATTTGAAGAGCAACAAGAAAAGTTAA
GGATTCTTCACGAGAAGTTCAAGGAGGAGGTCAACCAGCAGTTGCTCGGTTGCAAGAACTCTGTTGAGGATTTTGAGGCT
TACCATGCAGAACTTAAGGGAGTTGCTGACAAGCAAAAAGCCTCACACAAGAAGCTCCTTCAAAATGCTGAGAAGACAGT
CGGCGCTCAGCTGAGCGACGCGGAAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis