Browse Element(s) Details


OsAffx.20379.1.S1_at

Description gb:NM_196327.1
DB_XREF= gi:37534013
TID=OsAffx.20379.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0011L09.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2558011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25560Os.46686.1.S1_at11/1110+12899775..12906412myosin, putative, expressed
LOC_Os10g25560Os.40082.1.A1_x_at1/1110+12899775..12906412myosin, putative, expressed
LOC_Os10g25570Os.46685.1.S1_x_at11/1110+12926844..12927884expressed protein
LOC_Os10g25570Os.52427.1.S1_at8/1110+12926844..12927884expressed protein
LOC_Os10g25580OsAffx.20379.1.S1_at11/1110+12929937..12930182hypothetical protein
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20379.1.S1_at--377--7291Chr10:12930124..12930148 (25 bp)
GTGCCGCTAGTGTGCACTGGTTCTA
LOC_Os10g25580
OsAffx.20379.1.S1_at--721--1951Chr10:12930109..12930133 (25 bp)
ACTGGTTCTACGAGCCGGAGCACCA
LOC_Os10g25580
OsAffx.20379.1.S1_at--1043--5931Chr10:12930092..12930116 (25 bp)
GAGCACCACATGAGCGGCGATCCAT
LOC_Os10g25580
OsAffx.20379.1.S1_at--509--4631Chr10:12930076..12930100 (25 bp)
GCGATCCATCGTGCGAGGAGCTAGA
LOC_Os10g25580
OsAffx.20379.1.S1_at--405--1331Chr10:12930046..12930070 (25 bp)
AGAGGTCGCAAATCCTCGAGTCGAT
LOC_Os10g25580
OsAffx.20379.1.S1_at--956--9371Chr10:12930031..12930055 (25 bp)
TCGAGTCGATCCACCGCTCGTATGA
LOC_Os10g25580
OsAffx.20379.1.S1_at--895--1791Chr10:12930019..12930043 (25 bp)
ACCGCTCGTATGAAGTCGCTCTAGG
LOC_Os10g25580
OsAffx.20379.1.S1_at--985--5311Chr10:12930008..12930032 (25 bp)
GAAGTCGCTCTAGGGAGGCTAGCCT
LOC_Os10g25580
OsAffx.20379.1.S1_at--496--911Chr10:12929993..12930017 (25 bp)
AGGCTAGCCTTCGTGAGAGGCCCTT
LOC_Os10g25580
OsAffx.20379.1.S1_at--234--7371Chr10:12929981..12930005 (25 bp)
GTGAGAGGCCCTTCGTGCTTTCGTG
LOC_Os10g25580
OsAffx.20379.1.S1_at--196--7331Chr10:12929967..12929991 (25 bp)
GTGCTTTCGTGCTTCCTTGATGCCG
LOC_Os10g25580
Target Sequence 
GTGCCGCTAGTGTGCACTGGTTCTACGAGCCGGAGCACCACATGAGCGGCGATCCATCGTGCGAGGAGCTAGAGATGGAG
AGGTCGCAAATCCTCGAGTCGATCCACCGCTCGTATGAAGTCGCTCTAGGGAGGCTAGCCTTCGTGAGAGGCCCTTCGTG
CTTTCGTGCTTCCTTGATGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis