Browse Element(s) Details


OsAffx.20425.1.S1_x_at

Description gb:NM_196172.1
DB_XREF= gi:37533703
TID=OsAffx.20425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0032N04.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g238406/11hypothetical protein
LOC_Os03g163902/11expressed protein
LOC_Os08g138502/11hypothetical protein
LOC_Os12g346401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23820Os.46341.1.S1_at5/1110+11883559..11885022Transferase family protein, expressed
LOC_Os10g23830OsAffx.30517.1.S1_at11/1110+11892523..11892996pentatricopeptide, putative
LOC_Os10g23840OsAffx.20425.1.S1_at8/1110+11893585..11893926hypothetical protein
LOC_Os10g23840OsAffx.20425.1.S1_x_at6/1110+11893585..11893926hypothetical protein
LOC_Os10g23860NANA10+11905648..11907040hypothetical protein
LOC_Os10g23870NANA10+11908080..11910038hypothetical protein
LOC_Os10g23880Os.51869.1.S1_at10/1110+11914169..11921133retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20425.1.S1_x_at--265--773Chr10:11893687..11893711 (25 bp)
ATGTCGCGGCTCGTGTCGCTCTACT
LOC_Os10g23840
OsAffx.20425.1.S1_x_at--809--8711Chr10:11893700..11893724 (25 bp)
TGTCGCTCTACTGCTCATTGTCTGA
LOC_Os10g23840
OsAffx.20425.1.S1_x_at--518--9531Chr10:11893706..11893730 (25 bp)
TCTACTGCTCATTGTCTGACGTGGA
LOC_Os10g23840
OsAffx.20425.1.S1_x_at--1098--4811Chr10:11893712..11893736 (25 bp)
GCTCATTGTCTGACGTGGAGGACAG
LOC_Os10g23840
OsAffx.20425.1.S1_x_at--347--1152Chr10:11893796..11893820 (25 bp)
AGTCGCTCCTGCTCTGGCTCGCGTG
LOC_Os10g23840
OsAffx.20425.1.S1_x_at--71--1671Chr10:11893858..11893881 (24 bp)
AGCGCCACGCGGTTCGGGACGCGGA
LOC_Os10g23840
OsAffx.20425.1.S1_x_at--810--1831Chr10:11893985..11894005 (21 bp)
ACGCGGAGCGCGACGAAGCAGTTCA
NONE
OsAffx.20425.1.S1_x_at--297--3873Chr10:11894041..11894065 (25 bp)
CTGTACGCGGAGATGGACGCAGTCA
NONE
OsAffx.20425.1.S1_x_at--310--6478Chr11:2069874..2069994 (25 bp)
GATAAATTACGATAATACCCTACGA
NONE
OsAffx.20425.1.S1_x_at--738--1812Chr10:11894212..11894236 (25 bp)
ACCCTACGAAAATTATTATCTCTTG
NONE
OsAffx.20425.1.S1_x_at--750--1832Chr10:11894217..11894241 (25 bp)
ACGAAAATTATTATCTCTTGACAAA
NONE
Target Sequence 
ATGTCGCGGCTCGTGTCGCTCTACTGCTCATTGTCTGACGTGGAGGACAGGAGGCTCCGCGTGGACGCGCTGCTCGCCGA
GGGCGTCGCGCGCGTCACATCCACGGACCAGTCGCTCCTGCTCTGGCTCGCGTGTGGCGAGGTCGTGGCGGACCTCGACT
GTGCCGCCGGCAGCGCCACGCGGTTCGGGACGCGGAGCGCGACGAAGCAGTTCAGGAAGATGGAGCGGCACGTGGCCGCG
ACGGCGAAGCTGTACGCGGAGATGGACGCAGTCAGCGAGCTGGAGAAGGCAGCGAGGGCGGGGGAGGCGACGACGCTGGA
TGGGGAGGAGACACCAGGACAGGCGACGGAGGTGGAATGGAGGGGATCGGCCGACGAAGGAGAGGGATGGAAAGGAATTA
TACTGATAAATTACGATAATACCCTACGAAAATTATTATCTCTTGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20425.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis