Browse Element(s) Details


OsAffx.20433.1.S1_x_at

Description tigr:9638.m01921
TID=OsAffx.20433.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2270011/11expressed protein
LOC_Os07g333902/11ATPase, AAA family protein, expressed
LOC_Os07g334101/11ATPase, AAA family protein
LOC_Os03g609101/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22640NANA10+11433620..11439775retrotransposon protein, putative, unclassified
LOC_Os10g22650Os.28943.1.S1_x_at1/1110+11440409..11443587transposon protein, putative, unclassified
LOC_Os10g22660OsAffx.20435.1.S1_at11/1110+11447754..11448221hypothetical protein
LOC_Os10g22670OsAffx.30501.1.S1_at10/1110+11448576..11449285hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_x_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.22642.1.S1_x_at1/1110+11451129..11451915hypothetical protein
LOC_Os10g22690Os.52765.1.S1_at4/1110+11453165..11455525hypothetical protein
LOC_Os10g22700OsAffx.20433.1.S1_x_at11/1110+11460867..11461716expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_x_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.28845.1.S1_x_at1/1110+11464845..11466882expressed protein
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20433.1.S1_x_at--1075--9353Chr10:11461018..11461042 (25 bp)
TCGACAGGTACGTGCCCTTCATCAG
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--807--5811Chr10:11461071..11461095 (25 bp)
GACCGCGAGCTGGAGATCAGCATGA
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--922--1271Chr10:11461084..11461108 (25 bp)
AGATCAGCATGAACGAGGGCTCGTC
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--644--7191Chr10:11461106..11461130 (25 bp)
GTCGTGGAACGGCATCGTGCACCAC
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--175--831Chr10:11461158..11461182 (25 bp)
ATGGATCCGGCCCTCAAGAAGCAGT
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--355--3231Chr10:11461172..11461196 (25 bp)
CAAGAAGCAGTTCGATTTTAATAAA
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--646--8052Chr10:11461401..11461425 (25 bp)
GGAGAGGGTCATCGTCTTCACCACC
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--976--6231Chr10:11461470..11461494 (25 bp)
GATGGACAAGCACGTCTACATGGGC
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--578--9531Chr10:11461484..11461508 (25 bp)
TCTACATGGGCCACTGCGGCTGGGA
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--845--3931Chr10:11461576..11461600 (25 bp)
CGGCTCATCTCCCAGGCCGAGGTGA
LOC_Os10g22700
OsAffx.20433.1.S1_x_at--137--6152Chr10:11461609..11461633 (25 bp)
GAGGTGTCCGAGATGCTGCTGCGCA
LOC_Os10g22700
Target Sequence 
TCGACAGGTACGTGCCCTTCATCAGGGACGAGGTGGAGCGGGCGCGGCGGCGCGACCGCGAGCTGGAGATCAGCATGAAC
GAGGGCTCGTCGTGGAACGGCATCGTGCACCACCACCCGGCCACGTTCGACACGGTCGCCATGGATCCGGCCCTCAAGAA
GCAGTTCGATTTTAATAAAAGTCAAAACATCTTGTTAACCTTAAACGAGGAAGAGAAGGAGAAGCTGACGCTGTCCGGGC
TGCTCAACTTCATCGACGGGCTGTGGTCGACGAGCGGCGAGGAGAGGGTCATCGTCTTCACCACCAACTACAGGGAGCGC
CTCGACCCGGCGCTGCTCCGGCCGGGGCGGATGGACAAGCACGTCTACATGGGCCACTGCGGCTGGGACGCCTTCACGAC
GCTCGCCCGCAACTACTTCCTCGTCGACGACCACCCGCTGTTCCCGGAGATCCGGCGGCTCATCTCCCAGGCCGAGGTGA
CGCCGGCGGAGGTGTCCGAGATGCTGCTGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20433.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis