Browse Element(s) Details


OsAffx.2045.1.S1_x_at

Description gb:NM_183683.1
DB_XREF= gi:34894493
GEN=OJ1116_C07.10
TID=OsAffx.2045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1116_C07.10 (OJ1116_C07.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g487001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48650Os.49915.1.A1_at11/117+29128580..29131180Subtilisin N-terminal Region family protein, expressed
LOC_Os07g48660Os.57096.1.S1_at11/117+29143215..29145344bZIP transcription factor family protein, expressed
LOC_Os07g48670NANA7+29148147..29149634retrotransposon protein, putative, unclassified
LOC_Os07g48680Os.51359.1.S1_at10/117+29150852..29151741Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g48700OsAffx.28957.1.S1_at11/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.4557.1.S1_s_at1/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.2045.1.S1_x_at1/117+29154288..29160937expressed protein
LOC_Os07g48690Os.49951.1.S1_at11/117+29160723..29164881expressed protein
LOC_Os07g48710Os.4651.1.S1_at11/117+29169385..29170532VQ motif family protein, expressed
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2045.1.S1_x_at--24--3354Chr01:11606510..11606534 (25 bp)
CACGGCCCACGGGTCACGAGAGGTT
NONE
OsAffx.2045.1.S1_x_at--696--7551Chr01:11606689..11606713 (25 bp)
GTGGCCAGGAGGTATCGCCGATGCA
NONE
OsAffx.2045.1.S1_x_at--410--9411Chr01:11606729..11606753 (25 bp)
TCGTCGTCACGGGAGGTATCGCCAT
NONE
OsAffx.2045.1.S1_x_at--420--9691Chr01:11606735..11606759 (25 bp)
TCACGGGAGGTATCGCCATGCGCTG
NONE
OsAffx.2045.1.S1_x_at--993--2271Chr01:11606769..11606793 (25 bp)
AAATGCAGAGAGTTCGCGTCTTCGA
NONE
OsAffx.2045.1.S1_x_at--435--1191Chr01:11606779..11606803 (25 bp)
AGTTCGCGTCTTCGAAGACGGCCAT
NONE
OsAffx.2045.1.S1_x_at--302--5372Chr05:22930469..22930493 (25 bp)
GAAGACGGCCATGAGCTCGGCTTCT
NONE
OsAffx.2045.1.S1_x_at--709--4054Chr09:15861617..15861641 (25 bp)
CGATGGCGTCCATCAGCTTGTCCTT
NONE
OsAffx.2045.1.S1_x_at--253--1551Chr01:11606847..11607054 (25 bp)
AGCTTGTCCTTGATCACATGCCGCG
NONE
OsAffx.2045.1.S1_x_at--78--7231Chr01:11607145..11607169 (25 bp)
GTCGAGCTCGGCTGCATCGGCGCCA
NONE
OsAffx.2045.1.S1_x_at--196--4535Chr12:16382419..16382470 (25 bp)
GCCGCTCCACCGGTGAAGAGAAAAG
NONE
Target Sequence 
CACGGCCCACGGGTCACGAGAGGTTCGGCTGCCGGCGGCGCCGGCCAGCGACGCAAAAGAAAGGGAGGGCGTCGTCGGCG
GCGGGAGGTGGCCGGAGGAGGAGGCGCGGCGGCGGTGGCGCCGATGTGGCCAGGAGGTATCGCCGATGCAGGGGCTCGTC
GTTGGTCGTCGTCACGGGAGGTATCGCCATGCGCTGGGGATGTCAAAATGCAGAGAGTTCGCGTCTTCGAAGACGGCCAT
GAGCTCGGCTTCTCCCAGCACATGCCCCTCGATGGCGTCCATCAGCTTGTCCTTGATCACATGCCGCGTCCTGCGCCAGG
GCCGGCGCCACCGCACAGCCACGCTCGCGCCGAGCCGCCGCCAGCCGCGCCCCGACGCATCGGCGCCGCCGTCGCTCGGT
CGAGCTCGGCTGCATCGGCGCCACCGCCGCTGCGCCTGCGCGCTGGCCGCCACTCCACTGCCGCGCTTGCCCACCGCCGC
TCCACCGGTGAAGAGAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2045.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis