Browse Element(s) Details


OsAffx.20490.1.S1_at

Description gb:NM_195881.1
DB_XREF= gi:37533121
TID=OsAffx.20490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposase protein (OSJNBb0052C09.4), mRNA.
PROD=putative transposase protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2028011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g036306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g111606/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g279905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g272402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g112701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20240Os.8527.2.S1_x_at11/1110+9839135..9843093expressed protein
LOC_Os10g20240Os.8527.1.S1_at11/1110+9839135..9843093expressed protein
LOC_Os10g20250Os.13479.1.S1_at11/1110+9843145..9845939expressed protein
LOC_Os10g20260Os.46814.1.S1_at11/1110+9849044..9856261Cellulose synthase family protein, expressed
LOC_Os10g20270Os.44418.2.S1_at7/1110+9858684..9863139hypothetical protein
LOC_Os10g20270Os.44418.1.S1_at1/1110+9858684..9863139hypothetical protein
LOC_Os10g20280OsAffx.20490.1.S1_at11/1110+9866121..9869681transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20290OsAffx.18868.1.S1_at11/1110+9872308..9872983hypothetical protein
LOC_Os10g20300OsAffx.26996.1.S1_x_at1/1110+9877039..9879281hypothetical protein
LOC_Os10g20310Os.24385.2.S1_at11/1110+9884668..9886941expressed protein
LOC_Os10g20310OsAffx.12964.1.S1_at1/1110+9884668..9886941expressed protein
LOC_Os10g20320NANA10+9894109..9894792transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20490.1.S1_at--611--10431Chr10:9866710..9866734 (25 bp)
TTAGATGGCTAGCACGTGGACCAAT
LOC_Os10g20280
OsAffx.20490.1.S1_at--957--271Chr10:9866668..9866692 (25 bp)
ATAGAGCATTCAATACCCATGGGTA
LOC_Os10g20280
OsAffx.20490.1.S1_at--149--4191Chr10:9866653..9866677 (25 bp)
CCCATGGGTATAGGTTCAGATCAAA
LOC_Os10g20280
OsAffx.20490.1.S1_at--1048--2651Chr10:9866630..9866654 (25 bp)
AAGCGTTATGCCAGGGTGACTCAAA
LOC_Os10g20280
OsAffx.20490.1.S1_at--580--9815Chr08:16924460..16924483 (24 bp)
TAAAAACATCGAGCTACACGTCCGC
LOC_Os08g27990
OsAffx.20490.1.S1_at--42--9854Chr08:16924473..16924497 (25 bp)
TACACGTCCGCCAGTGATACTAACC
LOC_Os08g27990
OsAffx.20490.1.S1_at--1100--6471Chr10:9866555..9866579 (25 bp)
GATACTAACCCTATCCTTGGTGATA
LOC_Os10g20280
OsAffx.20490.1.S1_at--1000--6596Chr08:16924685..16924709 (25 bp)
GATTGAGCATGAGCCCTTTGTATTT
LOC_Os08g27990
OsAffx.20490.1.S1_at--606--3036Chr08:16924752..16924776 (25 bp)
AATCCAGGGTGGTCTATTGTAAGGA
LOC_Os08g27990
OsAffx.20490.1.S1_at--455--8213Chr02:1503348..1503372 (25 bp)
GGAATGCGAACCATACCATGTCAAT
LOC_Os02g03630
OsAffx.20490.1.S1_at--176--7654Chr08:16924858..16924882 (25 bp)
GGGAGCTATTTGACAGTGCACATGA
LOC_Os08g27990
Target Sequence 
TTAGATGGCTAGCACGTGGACCAATTGAGGTAGCAAAACGACATAGAGCATTCAATACCCATGGGTATAGGTTCAGATCA
AAGCGTTATGCCAGGGTGACTCAAAACAGTGGAGTTGTTGTGACTGTAAAAACATCGAGCTACACGTCCGCCAGTGATAC
TAACCCTATCCTTGGTGATATCATGTATTATGGAAGGATTGAGCATGAGCCCTTTGTATTTGCAAATCAAGTCAACCAAG
TGTTTTACATTGAAGACCATTTAAATCCAGGGTGGTCTATTGTAAGGAATATGAAACCCAGAGATGTATTTGAACTGGGC
GAAGAATGGAATGATGTGGAATGCGAACCATACCATGTCAATAATCTTGGGGAGCTATTTGACAGTGCACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis