Browse Element(s) Details


OsAffx.2052.1.S1_at

Description tigr:9629.m02081
TID=OsAffx.2052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2174011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21710OsAffx.22886.1.S1_at11/111+12167338..12169308hypothetical protein
LOC_Os01g21720NANA1+12170431..12171824retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g21730OsAffx.20313.1.S1_x_at4/111+12180719..12181485hypothetical protein
LOC_Os01g21740OsAffx.2052.1.S1_at11/111+12186014..12186478hypothetical protein
LOC_Os01g21750NANA1+12188028..12188369hypothetical protein
LOC_Os01g21760OsAffx.10689.1.S1_at11/111+12192066..12193294hypothetical protein
LOC_Os01g21760OsAffx.31174.4.S1_x_at1/111+12192066..12193294hypothetical protein
LOC_Os01g21770Os.51634.1.S1_at11/111+12196716..12197133expressed protein
LOC_Os01g21780OsAffx.23331.3.S1_s_at11/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_at9/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_x_at8/111+12202829..12206780hypothetical protein
LOC_Os01g21790NANA1+12207604..12208247hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2052.1.S1_at--232--4011Chr01:12186240..12186264 (25 bp)
CGTGCGGCCGGATACACTGCCCATA
LOC_Os01g21740
OsAffx.2052.1.S1_at--822--7951Chr01:12186231..12186255 (25 bp)
GGATACACTGCCCATACTTAACAAC
LOC_Os01g21740
OsAffx.2052.1.S1_at--63--2151Chr01:12186227..12186251 (25 bp)
ACACTGCCCATACTTAACAACAACG
LOC_Os01g21740
OsAffx.2052.1.S1_at--1000--1931Chr01:12186186..12186210 (25 bp)
ACGGCGGCACCGATCACAAGAGGAA
LOC_Os01g21740
OsAffx.2052.1.S1_at--869--4031Chr01:12186176..12186200 (25 bp)
CGATCACAAGAGGAAGGCGGTAATT
LOC_Os01g21740
OsAffx.2052.1.S1_at--867--7071Chr01:12186157..12186181 (25 bp)
GTAATTGTAAGCAGCGCGCAGCCGG
LOC_Os01g21740
OsAffx.2052.1.S1_at--1042--1851Chr01:12186118..12186142 (25 bp)
ACGACGACCGGCGAAAGCAGCAAGC
LOC_Os01g21740
OsAffx.2052.1.S1_at--916--4591Chr01:12186108..12186132 (25 bp)
GCGAAAGCAGCAAGCGGAAAGGACA
LOC_Os01g21740
OsAffx.2052.1.S1_at--573--3931Chr01:12186080..12186104 (25 bp)
CGGCGAGGCTCTGAATGTTCATGGA
LOC_Os01g21740
OsAffx.2052.1.S1_at--327--9011Chr01:12186069..12186093 (25 bp)
TGAATGTTCATGGAGCAATCGCTAG
LOC_Os01g21740
OsAffx.2052.1.S1_at--1050--1471Chr01:12186056..12186080 (25 bp)
AGCAATCGCTAGTAGCGCCGGCGGC
LOC_Os01g21740
Target Sequence 
CGTGCGGCCGGATACACTGCCCATACTTAACAACAACGGCCGCGGCGAAACCCGACGGCGGCACCGATCACAAGAGGAAG
GCGGTAATTGTAAGCAGCGCGCAGCCGGCGCGGGCGGAAAGGACGACGACCGGCGAAAGCAGCAAGCGGAAAGGACAGGG
CGGCGAGGCTCTGAATGTTCATGGAGCAATCGCTAGTAGCGCCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis