Browse Element(s) Details


OsAffx.20554.1.S1_at

Description gb:NM_195648.1
DB_XREF= gi:37532655
TID=OsAffx.20554.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0053D03.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1729011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17250Os.10703.2.S1_x_at1/1110+8340644..8346742retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17260Os.46551.1.S1_at11/1110+8347974..8349929Flavonoid 3'-monooxygenase, putative, expressed
LOC_Os10g17270OsAffx.30434.1.S1_at11/1110+8351456..8353955hypothetical protein
LOC_Os10g17270OsAffx.17567.1.S1_x_at1/1110+8351456..8353955hypothetical protein
LOC_Os10g17280Os.10703.1.S1_a_at11/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17280Os.10703.2.S1_x_at10/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17290OsAffx.20554.1.S1_at11/1110+8368042..8369336hypothetical protein
LOC_Os10g17300OsAffx.3761.1.S1_x_at2/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.30421.1.S1_s_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.18377.1.S1_x_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17310NANA10+8374691..8377727retrotransposon protein, putative, unclassified
LOC_Os10g17320Os.45977.1.S1_at1/1110+8381966..8385632retrotransposon protein, putative, unclassified
LOC_Os10g17320Os.55127.1.S1_at1/1110+8381966..8385632retrotransposon protein, putative, unclassified
LOC_Os10g17330OsAffx.20553.1.S1_at11/1110+8389166..8390194retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20554.1.S1_at--742--7351Chr10:8368813..8368837 (25 bp)
GTGAAGACCACTCCGGATACCTAGG
LOC_Os10g17290
OsAffx.20554.1.S1_at--408--311Chr10:8368829..8368853 (25 bp)
ATACCTAGGTGCCTCGCTCATTGAT
LOC_Os10g17290
OsAffx.20554.1.S1_at--781--7931Chr10:8368859..8368883 (25 bp)
GGATTTGACAAAGCTTGCCTCGGCC
LOC_Os10g17290
OsAffx.20554.1.S1_at--468--1031Chr10:8368903..8368927 (25 bp)
AGGTCTTCGCATCTGCCAAGGCTGT
LOC_Os10g17290
OsAffx.20554.1.S1_at--147--3431Chr10:8368950..8368974 (25 bp)
CAGACCGTGGTCTTTGTTGCCTTTT
LOC_Os10g17290
OsAffx.20554.1.S1_at--70--2271Chr10:8369017..8369041 (25 bp)
AAATACTTCATCTTTTCGACGTCGA
LOC_Os10g17290
OsAffx.20554.1.S1_at--126--4551Chr10:8369064..8369088 (25 bp)
GCCCTGGTTCGGATCAATATCTTCG
LOC_Os10g17290
OsAffx.20554.1.S1_at--592--171Chr10:8369142..8369166 (25 bp)
ATTTTCTACGCCATTGTCAACTCGA
LOC_Os10g17290
OsAffx.20554.1.S1_at--1060--8231Chr10:8369187..8369211 (25 bp)
GGCACTCAGAAAACCGTCTTCGGAA
LOC_Os10g17290
OsAffx.20554.1.S1_at--34--5891Chr10:8369235..8369259 (25 bp)
GAGCGCTCTGACATATGGCCAGTGA
LOC_Os10g17290
OsAffx.20554.1.S1_at--448--5451Chr10:8369258..8369282 (25 bp)
GAACGCGTCCATGCCCAAGTGGGAT
LOC_Os10g17290
Target Sequence 
GTGAAGACCACTCCGGATACCTAGGTGCCTCGCTCATTGATGAGGCGGATTTGACAAAGCTTGCCTCGGCCAGGGTTGTG
GCGAGCGGTCAGGTCTTCGCATCTGCCAAGGCTGTTGTGCCGAAGCCCGGCAAGAATCAGACCGTGGTCTTTGTTGCCTT
TTTCGACGCAGGGCTTCGTTTTCCGTGCACCTCCCTGTTGCCGGAAATACTTCATCTTTTCGACGTCGAGTTTCCCCAAC
TCAGCCCTTCCGCCCTGGTTCGGATCAATATCTTCGACTGGGCATGCCGAACTGCCGGTTTCGAGCCGACCGCCGAGCTG
TTTGGGGCGATTTTCTACGCCATTGTCAACTCGAAGACGGTGACTACCCCAGCTGGCACTCAGAAAACCGTCTTCGGAAG
TGCGAACTTCAACATTCGCCCGGAGCGCTCTGACATATGGCCAGTGAACGCGTCCATGCCCAAGTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis