Browse Element(s) Details


OsAffx.20590.1.S1_at

Description gb:NM_195521.1
DB_XREF= gi:37532401
TID=OsAffx.20590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0082N11.19), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1498011/11retrotransposon protein, putative, unclassified
LOC_Os03g362701/11retrotransposon protein, putative, unclassified
LOC_Os05g208201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14920Os.18714.1.S2_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920Os.18714.1.S1_a_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920OsAffx.28912.1.S1_at1/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14930OsAffx.19950.1.S1_at1/1110+7583488..7585622Zinc knuckle family protein
LOC_Os10g14940NANA10+7586481..7587092hypothetical protein
LOC_Os10g14950NANA10+7588776..7591273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14960OsAffx.8341.1.S1_at11/1110+7592733..7593869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14970OsAffx.8340.1.S1_at11/1110+7594296..7595753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14980OsAffx.20590.1.S1_at11/1110+7596656..7598625retrotransposon protein, putative, unclassified
LOC_Os10g14990OsAffx.30486.1.S1_at1/1110+7600861..7603223retrotransposon protein, putative, unclassified
LOC_Os10g15000OsAffx.8469.1.A1_x_at1/1110+7605761..7606278retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15010NANA10+7613400..7615701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15020NANA10+7622024..7622521hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20590.1.S1_at--743--2471Chr10:7598178..7598475 (25 bp)
AACACTCATGAGGTCGTCGAAACAT
LOC_Os10g14980
OsAffx.20590.1.S1_at--27--7791Chr10:7598167..7598464 (25 bp)
GGTCGTCGAAACATGGAACTCACTT
LOC_Os10g14980
OsAffx.20590.1.S1_at--844--4532Chr10:7598118..7598142 (25 bp)
GCCCTCACCTTGTTAAATCGTATCA
LOC_Os10g14980
OsAffx.20590.1.S1_at--1009--2671Chr10:7597133..7597157 (25 bp)
AAGCTGCCAAGATTGCCGAATTGAA
LOC_Os10g14980
OsAffx.20590.1.S1_at--966--5411Chr10:7597108..7597132 (25 bp)
GAAGCGAATTGAAACCCTCGAGAAA
LOC_Os10g14980
OsAffx.20590.1.S1_at--606--1572Chr03:20077646..20077670 (25 bp)
AGCTCAATTCGACATCTTGGTGAAT
LOC_Os03g36270
OsAffx.20590.1.S1_at--316--5331Chr10:7596883..7596907 (25 bp)
GAAGTCGCCAAAGCTACTATGCACT
LOC_Os10g14980
OsAffx.20590.1.S1_at--710--10131Chr10:7596866..7596890 (25 bp)
TATGCACTTAATCCAAGCCATGTTC
LOC_Os10g14980
OsAffx.20590.1.S1_at--1010--31Chr10:7596817..7596841 (25 bp)
ATTGATTTAGTTGAGGTCTTCGACA
LOC_Os10g14980
OsAffx.20590.1.S1_at--934--3831Chr10:7596783..7596807 (25 bp)
CTGCTCCGGACACGTGCTTTAAAAA
LOC_Os10g14980
OsAffx.20590.1.S1_at--683--9831Chr10:7596710..7596734 (25 bp)
TAAATCCTTGTATCCGAAAATCGAC
LOC_Os10g14980
Target Sequence 
AACACTCATGAGGTCGTCGAAACATGGAACTCACTTCCAATGGGAGATGAAACCGCTCAAGCCCTCACCTTGTTAAATCG
TATCATGAAGCTCAAGGAGCAAGTCCAAGCTGCCAAGATTGCCGAATTGAAGAAGCGAATTGAAACCCTCGAGAAAGACA
AAGGCAGTCTTATTAAAGAGAGGGAATCGGCCATCAAAGATGTTGAAGATCGCAAGATCAAATCTCAAGCTCAATTCGAC
ATCTTGGTGAATAAAATTAAGAATCTTGAAGGGGCTAGAGATGAAGTCGCCAAAGCTACTATGCACTTAATCCAAGCCAT
GTTCTATAATAACAACGGTCCGAGTACAATTGATTTAGTTGAGGTCTTCGACAAATTGCGAGCTGCTCCGGACACGTGCT
TTAAAAATATCAAGGAGGCTGGAAGCATGGGAGCAAGCATGGCGTTGGCGATGACTAAATCCTTGTATCCGAAAATCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis