Browse Element(s) Details


OsAffx.20614.1.S1_x_at

Description tigr:9638.m01145
TID=OsAffx.20614.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1261010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12570Os.45976.1.S1_at5/1110+6761110..6770587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12570Os.45976.1.S1_x_at2/1110+6761110..6770587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12580OsAffx.20615.1.S1_at5/1110+6771483..6773096retrotransposon protein, putative, unclassified
LOC_Os10g12590OsAffx.20615.1.S1_at6/1110+6775059..6777486retrotransposon protein, putative, unclassified
LOC_Os10g12590OsAffx.22699.1.S1_x_at2/1110+6775059..6777486retrotransposon protein, putative, unclassified
LOC_Os10g12610OsAffx.20614.1.S1_x_at10/1110+6784721..6785701hypothetical protein
LOC_Os10g12620Os.46710.2.S1_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed
LOC_Os10g12620Os.46710.1.S1_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed
LOC_Os10g12620Os.46710.3.S1_x_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed
LOC_Os10g12630Os.27691.1.S1_x_at1/1110+6803887..6809628retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20614.1.S1_x_at--555--3931Chr10:6784785..6784809 (25 bp)
CGGCGAGCTCGGTCGCAGCCAACAG
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--370--1591Chr10:6784790..6784814 (25 bp)
AGCTCGGTCGCAGCCAACAGGGAGG
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--1130--3971Chr10:6784819..6784843 (25 bp)
CGGTGGAGCTCAGTCATGGGCAACA
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--825--8071Chr10:6784823..6784847 (25 bp)
GGAGCTCAGTCATGGGCAACAGGGA
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--825--8451Chr10:6784899..6784923 (25 bp)
TGGCGCAGGCGGCAGCGAACTCGGG
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--107--8351Chr10:6784953..6784977 (25 bp)
GGCGGCGCTTCGGTGTGGGCGGGAA
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--1032--8631Chr10:6784966..6784990 (25 bp)
TGTGGGCGGGAAGGCCGGATTTGCC
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--366--4771Chr10:6785033..6785057 (25 bp)
GCTGCTGCCACCGTGAGGGACAAGC
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--1041--5591Chr10:6785051..6785075 (25 bp)
GACAAGCCCAACGCCGGTGGAGCTA
LOC_Os10g12610
OsAffx.20614.1.S1_x_at--848--371NONE
ATCACCTCCCAAGCTGGCTTAAGAT
NONE
OsAffx.20614.1.S1_x_at--999--8297Chr12:5407638..5407662 (25 bp)
GGCTTAAGATGACCGCCAGCGAAAA
NONE
Target Sequence 
CGGCGAGCTCGGTCGCAGCCAACAGGGAGGGCGGCGGTGGAGCTCAGTCATGGGCAACAGGGAGGGCGGCGGCGGAGCTC
GGGCGCGGGCGAAAGGGAGGGCGGAGGAGAGGGCTGGCGCAGGCGGCAGCGAACTCGGGCGAGGGCAATAGGGAGGGCGG
CGGCGGCTGGCGGCGCTTCGGTGTGGGCGGGAAGGCCGGATTTGCCGCCGCCGTGCCGCTGGGAGGCCGGATCCGCCGCG
GGGACAAGGCTGCTGCCACCGTGAGGGACAAGCCCAACGCCGGTGGAGCTACTCCTCGTCCAGGTCTACCGCCTCATCAC
CTCCCAAGCTGGCTTAAGATGACCGCCAGCGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20614.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis