Browse Element(s) Details


OsAffx.20641.1.S1_at

Description tigr:9638.m01040
TID=OsAffx.20641.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1075011/11hypothetical protein
LOC_Os10g1159011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10724NANA10+5701085..5701291hypothetical protein
LOC_Os10g10730OsAffx.30391.1.S1_at11/1110+5702828..5707548hypothetical protein
LOC_Os10g10740OsAffx.18226.1.S1_at7/1110+5708084..5708692hypothetical protein
LOC_Os10g10744OsAffx.18226.2.S1_at10/1110+5709103..5709504hypothetical protein
LOC_Os10g10750OsAffx.20641.1.S1_at11/1110+5712245..5713116hypothetical protein
LOC_Os10g10760Os.52861.1.S1_at11/1110+5714908..5715602expressed protein
LOC_Os10g10770Os.47463.1.S1_x_at5/1110+5717113..5720810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10770Os.14491.2.S1_x_at3/1110+5717113..5720810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10780NANA10+5723643..5726974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10794OsAffx.20657.1.S1_at5/1110+5737077..5737304hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20641.1.S1_at--14--10173Chr10:5712275..5712299 (25 bp)
TATCAGTGGCTTGCAGACCATGCTT
LOC_Os10g10750
OsAffx.20641.1.S1_at--955--5033Chr10:5712287..5712311 (25 bp)
GCAGACCATGCTTTTGTGTGTGTTT
LOC_Os10g10750
OsAffx.20641.1.S1_at--558--7472Chr10:5712304..5712328 (25 bp)
GTGTGTTTTCACACGTGATACTACT
LOC_Os10g10750
OsAffx.20641.1.S1_at--608--1452Chr10:5712354..5712378 (25 bp)
AGAAGATATTACCATTACTCCCTCC
LOC_Os10g10750
OsAffx.20641.1.S1_at--875--9293Chr10:5712376..5712400 (25 bp)
TCCGCTTATGCCACTTGATCAAGTT
LOC_Os10g10750
OsAffx.20641.1.S1_at--255--8212Chr10:5712525..5712549 (25 bp)
GGAATGGTCATCTTTGTAAGCTCTA
LOC_Os10g10750
OsAffx.20641.1.S1_at--497--3752Chr10:5712545..5712569 (25 bp)
CTCTATAGGCTTTGTGGAAGGCTAC
LOC_Os10g10750
OsAffx.20641.1.S1_at--183--8272Chr10:5712708..5712729 (22 bp)
GGCAGTTTCAAACCTGTGATGTTAG
LOC_Os10g10750
OsAffx.20641.1.S1_at--604--612Chr10:5712744..5712768 (25 bp)
ATGCTTACCGACCATTTAACTAAAT
LOC_Os10g10750
OsAffx.20641.1.S1_at--603--1652Chr10:5712929..5712953 (25 bp)
AGCCTGCACACTACATGCTTCAGTA
LOC_Os10g10750
OsAffx.20641.1.S1_at--53--4912Chr10:5712945..5712969 (25 bp)
GCTTCAGTAGGGTGCAGTTTGATCC
LOC_Os10g10750
Target Sequence 
TATCAGTGGCTTGCAGACCATGCTTTTGTGTGTGTTTTCACACGTGATACTACTATTACTGAGATAGCAAACATGCATGA
GAAGATATTACCATTACTCCCTCCGCTTATGCCACTTGATCAAGTTTTCGAGTTTACTTACCATAATGACATTTATGTTG
ATGTTATTGGAATGGTCATCTTTGTAAGCTCTATAGGCTTTGTGGAAGGCTACAAGAAGAGGATCCCATATAGGAATATT
CTTATAATTGATGGCAGTTTCAAACCTGTGATGTTAGTTATTAAGGATAAAATGCTTACCGACCATTTAACTAAATGGGC
GAGATGCTCTAATGAGCAACCTATCATTGTAGCAACAATGCNTAGAGCAAAGCGTGAAGAAGACCATAGCCTGCACACTA
CATGCTTCAGTAGGGTGCAGTTTGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis