Browse Element(s) Details


OsAffx.20646.1.S1_at

Description gb:NM_195295.1
DB_XREF= gi:37531949
TID=OsAffx.20646.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0040E17.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1148011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11454Os.45173.1.S1_x_at6/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454Os.47999.2.A1_x_at3/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454OsAffx.20691.1.A1_x_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454OsAffx.28520.1.S1_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454Os.47999.3.A1_x_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11480OsAffx.20646.1.S1_at11/1110+6126694..6127385hypothetical protein
LOC_Os10g11500Os.9421.1.S1_at11/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11500OsAffx.28437.1.S1_s_at1/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11506OsAffx.28661.1.S1_x_at2/1110+6138887..6141844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11512NANA10+6148916..6149151hypothetical protein
LOC_Os10g11520OsAffx.20707.2.S1_x_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.2.S1_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520Os.36435.2.S1_x_at5/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.1.S1_x_at1/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11530OsAffx.20644.1.S1_at11/1110+6151554..6153775hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20646.1.S1_at--1019--6351Chr10:6127044..6127068 (25 bp)
GATGCCAAGCATGCCTGCAAGATGT
LOC_Os10g11480
OsAffx.20646.1.S1_at--293--711Chr10:6127072..6127096 (25 bp)
ATGAGGTCATCTTCCCTCTTTTTGA
LOC_Os10g11480
OsAffx.20646.1.S1_at--434--691Chr10:6127107..6127131 (25 bp)
ATGATAATTTGTGTCCCGTTGTTCC
LOC_Os10g11480
OsAffx.20646.1.S1_at--325--8651Chr10:6127116..6127140 (25 bp)
TGTGTCCCGTTGTTCCAAGTTAACA
LOC_Os10g11480
OsAffx.20646.1.S1_at--6--891Chr10:6127149..6127173 (25 bp)
AGGCCATCCCATGCTAACGGTGGTG
LOC_Os10g11480
OsAffx.20646.1.S1_at--342--9811Chr10:6127163..6127187 (25 bp)
TAACGGTGGTGTTGTGACCCCTGTG
LOC_Os10g11480
OsAffx.20646.1.S1_at--852--8891Chr10:6127205..6127229 (25 bp)
TGAGAACAACCCCTGTCCGAGTATG
LOC_Os10g11480
OsAffx.20646.1.S1_at--460--7251Chr10:6127219..6127243 (25 bp)
GTCCGAGTATGGACACATCGTCCTA
LOC_Os10g11480
OsAffx.20646.1.S1_at--399--2671Chr10:6127290..6127314 (25 bp)
AAGCGACCACTTTGCTTCGTGGAAG
LOC_Os10g11480
OsAffx.20646.1.S1_at--363--5411Chr10:6127311..6127335 (25 bp)
GAAGCGAGCACACCCGTTGGACATG
LOC_Os10g11480
OsAffx.20646.1.S1_at--507--2111Chr10:6127331..6127355 (25 bp)
ACATGGGAAGGTGCTCATTCCATCC
LOC_Os10g11480
Target Sequence 
GATGCCAAGCATGCCTGCAAGATGTTCCATGAGGTCATCTTCCCTCTTTTTGACATACCATGGATGATAATTTGTGTCCC
GTTGTTCCAAGTTAACAATGCACTCAGGCCATCCCATGCTAACGGTGGTGTTGTGACCCCTGTGGCAGCGCCCAATGGAA
ATGAGAACAACCCCTGTCCGAGTATGGACACATCGTCCTACTTGCTAGATAGCCCTCCACCAAAGCGACCACTTTGCCCT
CTGCCGAAGCGACCACTTTGCTTCGTGGAAGCGAGCACACCCGTTGGACATGGGAAGGTGCTCATTCCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis