Browse Element(s) Details


OsAffx.2065.1.S1_x_at

Description tigr:9629.m02264
TID=OsAffx.2065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2350011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23440Os.34746.2.S1_x_at4/111+13153384..13156610expressed protein
LOC_Os01g23460OsAffx.10633.1.S1_at4/111+13162788..13165269retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23470NANA1+13165547..13167988retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23480NANA1+13169311..13169778hypothetical protein
LOC_Os01g23490NANA1+13171396..13172894retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23500OsAffx.2065.1.S1_x_at11/111+13179237..13179662hypothetical protein
LOC_Os01g23510NANA1+13183193..13184923hypothetical protein
LOC_Os01g23520OsAffx.10645.1.S1_at3/111+13187577..13187894hypothetical protein
LOC_Os01g23530OsAffx.11172.1.S1_at11/111+13194468..13201044Terpene synthase family, metal binding domain containing protein
LOC_Os01g23540NANA1+13203385..13206333retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2065.1.S1_x_at--854--9951Chr01:13179608..13179632 (25 bp)
TACCATTTTCAACCCGTGGCTACAA
LOC_Os01g23500
OsAffx.2065.1.S1_x_at--43--9712Chr04:21280253..21280277 (25 bp)
TCAACCCGTGGCTACAAGCTACAAT
NONE
OsAffx.2065.1.S1_x_at--562--1571Chr01:13179584..13179608 (25 bp)
AGCTACAATGCTATCCGGGACCAAA
LOC_Os01g23500
OsAffx.2065.1.S1_x_at--875--7631Chr01:13179568..13179592 (25 bp)
GGGACCAAATTGCCCTCTCCTCTGT
LOC_Os01g23500
OsAffx.2065.1.S1_x_at--213--10591Chr01:13179536..13179560 (25 bp)
TTCTCTTCCAACTCTGGCTATCTCG
LOC_Os01g23500
OsAffx.2065.1.S1_x_at--531--10691Chr01:13179531..13179555 (25 bp)
TTCCAACTCTGGCTATCTCGTCTTT
LOC_Os01g23500
OsAffx.2065.1.S1_x_at--965--1991Chr01:13179526..13179550 (25 bp)
ACTCTGGCTATCTCGTCTTTCTCGT
LOC_Os01g23500
OsAffx.2065.1.S1_x_at--1092--1611Chr01:13179465..13179489 (25 bp)
AGCGGCGCGTCCGTTGGCTGGCAGC
LOC_Os01g23500
OsAffx.2065.1.S1_x_at--940--8992Chr06:963214..963293 (24 bp)
TGAAGGCAGCGATGCACGCGTGCGT
NONE
OsAffx.2065.1.S1_x_at--588--1632Chr06:963207..963227 (21 bp)
AGCGATGCACGCGTGCGTCGGGCGG
NONE
OsAffx.2065.1.S1_x_at--801--5151Chr01:13179282..13179306 (25 bp)
GCAACTACACATGCCAAGCAGCTCC
LOC_Os01g23500
Target Sequence 
TACCATTTTCAACCCGTGGCTACAAGCTACAATGCTATCCGGGACCAAATTGCCCTCTCCTCTGTCCCCATCTTCTCTTC
CAACTCTGGCTATCTCGTCTTTCTCGTCCTCCGGCGTGACGGCGCAGATGGGGAAAAGGCAGCAGCGGCGCGTCCGTTGG
CTGGCAGCGGTGGTGCAGATGGGGGAAGGAATGCGGTGGCGCAAATAGGGGGGGAGGGTGAAGGCAGCGATGCACGCGTG
CGTCGGGCGGCGGCGCGGATGGGGAAGAGGCGGCGGCGTGCACGTGCGTCGGGCGATGGCGGCGGCGCAGATAGGGAAGA
AGGCAAGCAACTACACATGCCAAGCAGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2065.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis