Browse Element(s) Details


OsAffx.11172.1.S1_at

Description tigr:9629.m02267
TID=OsAffx.11172.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2353011/11Terpene synthase family, metal binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23480NANA1+13169311..13169778hypothetical protein
LOC_Os01g23490NANA1+13171396..13172894retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23500OsAffx.2065.1.S1_x_at11/111+13179237..13179662hypothetical protein
LOC_Os01g23510NANA1+13183193..13184923hypothetical protein
LOC_Os01g23520OsAffx.10645.1.S1_at3/111+13187577..13187894hypothetical protein
LOC_Os01g23530OsAffx.11172.1.S1_at11/111+13194468..13201044Terpene synthase family, metal binding domain containing protein
LOC_Os01g23540NANA1+13203385..13206333retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23550OsAffx.20387.1.S1_x_at1/111+13206586..13209058transposon protein, putative, unclassified
LOC_Os01g23560NANA1+13210552..13212334hypothetical protein
LOC_Os01g23570Os.38764.1.S1_x_at7/111+13215791..13216552hypothetical protein
LOC_Os01g23570Os.45173.1.S1_x_at2/111+13215791..13216552hypothetical protein
LOC_Os01g23570Os.10731.2.A1_at1/111+13215791..13216552hypothetical protein
LOC_Os01g23580Os.38984.1.S1_s_at11/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23580Os.38984.1.S1_at5/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23580OsAffx.22314.1.S1_x_at1/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11172.1.S1_at--428--10051Chr01:13200309..13200333 (25 bp)
TAGTTCAGGCCTACACCAAGGAGTT
LOC_Os01g23530
OsAffx.11172.1.S1_at--737--7491Chr01:13200402..13200426 (25 bp)
GTGGTGGTTTTACATTAGCAGCTGC
LOC_Os01g23530
OsAffx.11172.1.S1_at--906--8892Chr01:13200480..13200504 (25 bp)
TGAGTTATCCATCCCTTTTCAAGAC
LOC_Os01g23530
OsAffx.11172.1.S1_at--886--8831Chr01:13200508..13200532 (25 bp)
TGATATATTTGTGCGACTCTCCAAT
LOC_Os01g23530
OsAffx.11172.1.S1_at--798--5851Chr01:13200766..13200790 (25 bp)
GACCACTATGCCTCTACAATTCAAT
LOC_Os01g23530
OsAffx.11172.1.S1_at--393--7631Chr01:13200808..13200832 (25 bp)
GGGACAACAATTCATGAGACCTACC
LOC_Os01g23530
OsAffx.11172.1.S1_at--553--6951Chr01:13200874..13200898 (25 bp)
GTAGAACATTGCACAAACCCGATTG
LOC_Os01g23530
OsAffx.11172.1.S1_at--429--8871Chr01:13200897..13200921 (25 bp)
TGATGACCAACCATTGATCGTGCCC
LOC_Os01g23530
OsAffx.11172.1.S1_at--1109--6371Chr01:13200912..13200936 (25 bp)
GATCGTGCCCCAGACTGTAGTGAAC
LOC_Os01g23530
OsAffx.11172.1.S1_at--229--7371Chr01:13200949..13200973 (25 bp)
GTGACAACCATGTATACCCACGGTG
LOC_Os01g23530
OsAffx.11172.1.S1_at--51--7771Chr01:13200970..13200994 (25 bp)
GGTGATGCATTCACTTCTTCACACA
LOC_Os01g23530
Target Sequence 
TAGTTCAGGCCTACACCAAGGAGTTAAAATGGCGTGACGAGGATTATACGCCAAAAACGTTGGAGGAACATTTTGAGGTT
TCAATGAGAAGTAGTGGTGGTTTTACATTAGCAGCTGCTTCATTTGTTGGAATGGATGACATAGCAACCAAAGACATATT
TGAATGGATTTTGAGTTATCCATCCCTTTTCAAGACTTTTGATATATTTGTGCGACTCTCCAATGATATTGTATCAAATA
AGCGTGAGCAAACTGGGGACCACTATGCCTCTACAATTCAATGCTACATGAAGGAGCATGGGACAACAATTCATGAGACC
TACCAAAGGTTAAGAGAACTCATCGAAGACTCATGGAAGGATATGGTAGAACATTGCACAAACCCGATTGATGACCAACC
ATTGATCGTGCCCCAGACTGTAGTGAACTTCGCAAGGACAGTGACAACCATGTATACCCACGGTGATGCATTCACTTCTT
CACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis