Browse Element(s) Details


Os.38984.1.S1_at

Description gb:AY333187.1
DB_XREF= gi:33465892
TID=Os.38984.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38984 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) H+-pyrophosphatase mRNA, complete cds.
PROD=H+-pyrophosphatase
FL= gb:AY333187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g235805/11Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23530OsAffx.11172.1.S1_at11/111+13194468..13201044Terpene synthase family, metal binding domain containing protein
LOC_Os01g23540NANA1+13203385..13206333retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23550OsAffx.20387.1.S1_x_at1/111+13206586..13209058transposon protein, putative, unclassified
LOC_Os01g23560NANA1+13210552..13212334hypothetical protein
LOC_Os01g23570Os.38764.1.S1_x_at7/111+13215791..13216552hypothetical protein
LOC_Os01g23570Os.45173.1.S1_x_at2/111+13215791..13216552hypothetical protein
LOC_Os01g23570Os.10731.2.A1_at1/111+13215791..13216552hypothetical protein
LOC_Os01g23580Os.38984.1.S1_s_at11/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23580Os.38984.1.S1_at5/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23580OsAffx.22314.1.S1_x_at1/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23590Os.16549.1.S1_at9/111+13237130..13244709expressed protein
LOC_Os01g23590Os.37090.1.S1_x_at1/111+13237130..13244709expressed protein
LOC_Os01g23600Os.49392.1.S2_at11/111+13247411..13249150expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0010248biological_processestablishment and/or maintenance of transmembrane electrochemical gradient
GO:0005739cellular_componentmitochondrion
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0010008cellular_componentendosome membrane
GO:0009678molecular_functionhydrogen-translocating pyrophosphatase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38984.1.S1_at--631--6551Chr01:13228466..13228490 (25 bp)
GATTATCTGTATTTATTCAGGCTAG
LOC_Os01g23580
Os.38984.1.S1_at--324--9471Chr01:13228471..13228495 (25 bp)
TCTGTATTTATTCAGGCTAGCACCT
LOC_Os01g23580
Os.38984.1.S1_at--1131--171Chr01:13228476..13228500 (25 bp)
ATTTATTCAGGCTAGCACCTGAGAG
LOC_Os01g23580
Os.38984.1.S1_at--776--10211Chr01:13228479..13228503 (25 bp)
TATTCAGGCTAGCACCTGAGAGTTC
LOC_Os01g23580
Os.38984.1.S1_at--65--931Chr01:13228484..13228508 (25 bp)
AGGCTAGCACCTGAGAGTTCCATGC
LOC_Os01g23580
Os.38984.1.S1_at--1127--4851Chr01:13228486..13228510 (25 bp)
GCTAGCACCTGAGAGTTCCATGCCA
NONE
Os.38984.1.S1_at--588--10011Chr01:13228488..13228512 (25 bp)
TAGCACCTGAGAGTTCCATGCCAAA
NONE
Os.38984.1.S1_at--96--5091Chr01:13228490..13228514 (25 bp)
GCACCTGAGAGTTCCATGCCAAACA
NONE
Os.38984.1.S1_at--131--1771Chr01:13228492..13228516 (25 bp)
ACCTGAGAGTTCCATGCCAAACACA
NONE
Os.38984.1.S1_at--699--8891Chr01:13228495..13228519 (25 bp)
TGAGAGTTCCATGCCAAACACAAAA
NONE
Os.38984.1.S1_at--320--10651Chr01:13228501..13228525 (25 bp)
TTCCATGCCAAACACAAAAATACAA
NONE
Target Sequence 
GATTATCTGTATTTATTCAGGCTAGCACCTGAGAGTTCCATGCCAAACACAAAAATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis