Browse Element(s) Details


Os.16549.1.S1_at

Description gb:AK119468.1
DB_XREF= gi:37989091
TID=Os.16549.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0487E11.14 (P0487E11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-A05, full insert sequence.
FL= gb:AK119468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g235909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23560NANA1+13210552..13212334hypothetical protein
LOC_Os01g23570Os.38764.1.S1_x_at7/111+13215791..13216552hypothetical protein
LOC_Os01g23570Os.45173.1.S1_x_at2/111+13215791..13216552hypothetical protein
LOC_Os01g23570Os.10731.2.A1_at1/111+13215791..13216552hypothetical protein
LOC_Os01g23580Os.38984.1.S1_s_at11/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23580Os.38984.1.S1_at5/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23580OsAffx.22314.1.S1_x_at1/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23590Os.16549.1.S1_at9/111+13237130..13244709expressed protein
LOC_Os01g23590Os.37090.1.S1_x_at1/111+13237130..13244709expressed protein
LOC_Os01g23600Os.49392.1.S2_at11/111+13247411..13249150expressed protein
LOC_Os01g23610Os.20630.1.S1_at9/111+13255095..13264539Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os01g23620Os.10984.1.S1_at11/111+13268584..13270947GTP-binding protein SAR1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16549.1.S1_at--700--5711Chr01:13237283..13237307 (25 bp)
GACTGTTCCGGTAAGTATTTGTTTG
LOC_Os01g23590
Os.16549.1.S1_at--1077--8592Chr11:25293385..25293405 (21 bp)
TGGTCCTTTTCTTTTTGTCCTATGC
NONE
Os.16549.1.S1_at--1111--10311Chr01:13237253..13237277 (25 bp)
TTTCTTTTTGTCCTATGCCCTGTGA
LOC_Os01g23590
Os.16549.1.S1_at--249--7251Chr01:13237244..13237268 (25 bp)
GTCCTATGCCCTGTGATTAGACTTC
LOC_Os01g23590
Os.16549.1.S1_at--242--1391Chr01:13237226..13237250 (25 bp)
AGACTTCACAGGCTTAATAACACAT
LOC_Os01g23590
Os.16549.1.S1_at--211--9751Chr01:13237212..13237236 (25 bp)
TAATAACACATGATGATGCGTCAAT
LOC_Os01g23590
Os.16549.1.S1_at--93--6351Chr01:13237198..13237222 (25 bp)
GATGCGTCAATATTCCAAAGTGGTA
LOC_Os01g23590
Os.16549.1.S1_at--387--2871NONE
AAGTGGTAACAGTCGCATATGGGCT
NONE
Os.16549.1.S1_at--968--4951Chr01:13237167..13237191 (25 bp)
GCATATGGGCTGTATTTAGCAGACT
LOC_Os01g23590
Os.16549.1.S1_at--455--10451Chr01:13237143..13237167 (25 bp)
TTAGACTAACAATAAGCCATTCGGT
LOC_Os01g23590
Os.16549.1.S1_at--898--2651Chr01:13237130..13237154 (25 bp)
AAGCCATTCGGTTTTGCTTGTCTTT
NONE
Target Sequence 
GACTGTTCCGGTAAGTATTTGTTTGGTCCTTTTCTTTTTGTCCTATGCCCTGTGATTAGACTTCACAGGCTTAATAACAC
ATGATGATGCGTCAATATTCCAAAGTGGTAACAGTCGCATATGGGCTGTATTTAGCAGACTTAGACTAACAATAAGCCAT
TCGGTTTTGCTTGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis