Browse Element(s) Details


Os.20630.1.S1_at

Description gb:AK120645.1
DB_XREF= gi:37990268
TID=Os.20630.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipoamide dehydrogenase (P0487E11.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155F12, full insert sequence.
FL= gb:AK120645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g236109/11Dihydrolipoyl dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23590Os.16549.1.S1_at9/111+13237130..13244709expressed protein
LOC_Os01g23590Os.37090.1.S1_x_at1/111+13237130..13244709expressed protein
LOC_Os01g23600Os.49392.1.S2_at11/111+13247411..13249150expressed protein
LOC_Os01g23610Os.20630.1.S1_at9/111+13255095..13264539Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os01g23620Os.10984.1.S1_at11/111+13268584..13270947GTP-binding protein SAR1A, putative, expressed
LOC_Os01g23630OsAffx.23355.1.S1_s_at11/111+13274139..13276948Transcription initiation factor IID, 18kD subunit family protein
LOC_Os01g23640Os.7156.1.S1_at11/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23640OsAffx.18527.1.S1_at8/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009570cellular_componentchloroplast stroma
GO:0004148molecular_functiondihydrolipoyl dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20630.1.S1_at--67--2131Chr01:13264031..13264055 (25 bp)
ACACCCAACTTTGTCTGAGGTTCTG
LOC_Os01g23610
Os.20630.1.S1_at--519--1011Chr01:13264048..13264072 (25 bp)
AGGTTCTGGATGAGCTCTTCAAAGC
LOC_Os01g23610
Os.20630.1.S1_at--878--3011Chr01:13264166..13264190 (25 bp)
AATGCAGGTGTTCCTCATTCCGTAA
LOC_Os01g23610
Os.20630.1.S1_at--372--3551Chr01:13264181..13264205 (25 bp)
CATTCCGTAAATGAGCCCGTCGCAG
LOC_Os01g23610
Os.20630.1.S1_at--906--5871Chr01:13264193..13264217 (25 bp)
GAGCCCGTCGCAGCCTAGAGAGGAA
LOC_Os01g23610
Os.20630.1.S1_at--616--6191Chr01:13264212..13264236 (25 bp)
GAGGAACATCATCTGGGATAGCCCC
LOC_Os01g23610
Os.20630.1.S1_at--223--7271Chr01:13264247..13264271 (25 bp)
GTCCTTGATTCCTAGTTACTGGCAA
LOC_Os01g23610
Os.20630.1.S1_at--829--7071Chr01:13264282..13264306 (25 bp)
GTAATTCCTGATGAGATCCACCAGT
LOC_Os01g23610
Os.20630.1.S1_at--1038--6031Chr01:13264375..13264399 (25 bp)
GAGATATCTAGTTACCGCGGAAAAG
LOC_Os01g23610
Os.20630.1.S1_at--180--5931Chr01:13264579..13264603 (25 bp)
GAGCAGCATCAACAGGCCAAGGCAT
NONE
Os.20630.1.S1_at--751--3011Chr01:13264610..13264632 (23 bp)
AATGCTTCTATAGTTGTGGTTGACA
NONE
Target Sequence 
ACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGGTTAATGCAGGTGTTCCTCATTCCGTAAATG
AGCCCGTCGCAGCCTAGAGAGGAACATCATCTGGGATAGCCCCCCTCTTGGATGTCCTTGATTCCTAGTTACTGGCAAGT
GTAATTCGGTAATTCCTGATGAGATCCACCAGTTAGTGCTGAGATATCTAATTACTGCGGAAAAAGAGAGGAACTACTGA
TGAGATCCACCAGTTAGTGCTGAGATATCTAGTTACCGCGGAAAAGAGAGGAACTACTGCGTCGTTCTANGTATGATGTA
TCACATATACATAACAGTTTTGCAGCTTATGTAGAGTTCATCCGTACAGTGCTTTCACANNNNNNNNNNNNNNNNNNNNN
NNAANANNANNNNNANNAGCTTGCTCANNNNNNNANNNNANANANACCTACTCTTGCTTGCTTTGGAGCAGCATCAACAG
GCCAAGGCATGATGGAAATGCTTCTATAGTTGTGGTTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis