Browse Element(s) Details


Os.7156.1.S1_at

Description gb:AK068083.1
DB_XREF= gi:32978101
TID=Os.7156.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088D01.3 (B1088D01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131J21, full insert sequence.
FL= gb:AK068083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2364011/11Mov34/MPN/PAD-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23610Os.20630.1.S1_at9/111+13255095..13264539Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os01g23620Os.10984.1.S1_at11/111+13268584..13270947GTP-binding protein SAR1A, putative, expressed
LOC_Os01g23630OsAffx.23355.1.S1_s_at11/111+13274139..13276948Transcription initiation factor IID, 18kD subunit family protein
LOC_Os01g23640Os.7156.1.S1_at11/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23640OsAffx.18527.1.S1_at8/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23650OsAffx.18389.2.S1_at11/111+13292459..13292797hypothetical protein
LOC_Os01g23660NANA1+13294254..13294856hypothetical protein
LOC_Os01g23670NANA1+13296915..13297872retrotransposon protein, putative, unclassified
LOC_Os01g23680Os.19014.1.S1_at10/111+13301776..13306281expressed protein
LOC_Os01g23680Os.47705.1.A1_at9/111+13301776..13306281expressed protein
LOC_Os01g23690OsAffx.23356.1.S1_at11/111+13309905..13310644hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7156.1.S1_at--840--7751Chr01:13286527..13286551 (25 bp)
GGTGATGTTACCTGAAGCAATTGCA
LOC_Os01g23640
Os.7156.1.S1_at--307--10211Chr01:13287300..13287324 (25 bp)
TATTTCATCTCTCTGATCCTGGCGG
LOC_Os01g23640
Os.7156.1.S1_at--746--551Chr01:13287315..13287339 (25 bp)
ATCCTGGCGGTATGGGTGTGATCCA
LOC_Os01g23640
Os.7156.1.S1_at--112--7751Chr01:13287329..13287353 (25 bp)
GGTGTGATCCATGATTGCCCGGAGA
LOC_Os01g23640
Os.7156.1.S1_at--459--71Chr01:13287342..13287366 (25 bp)
ATTGCCCGGAGAGAGGATTCCATCC
LOC_Os01g23640
Os.7156.1.S1_at--177--351Chr01:13287369..13287393 (25 bp)
ATAAGGCCCCTCTAGATGGTTCACC
LOC_Os01g23640
Os.7156.1.S1_at--1130--9311Chr01:13287410..13287434 (25 bp)
TCCCATGTGTATATGAACCCCGATG
LOC_Os01g23640
Os.7156.1.S1_at--654--8871Chr01:13287467..13287491 (25 bp)
TGAGAACTCCATCCGCGAAAGACTG
LOC_Os01g23640
Os.7156.1.S1_at--55--1611Chr01:13287494..13287518 (25 bp)
AGCTGAACAAGTTGGCTGCCTTTAT
LOC_Os01g23640
Os.7156.1.S1_at--537--7311Chr01:13287529..13287553 (25 bp)
GTGCTGAAGAATCTCGAATACCGAT
LOC_Os01g23640
Os.7156.1.S1_at--119--171Chr01:13287648..13287672 (25 bp)
ATTATACTCACTTAGCTCTCAAGAT
LOC_Os01g23640
Target Sequence 
GGTGATGTTACCTGAAGCAATTGCAATAGTTATGGCACCTACTGACACAAGAAGAAAACATGGTATATTTCATCTCTCTG
ATCCTGGCGGTATGGGTGTGATCCATGATTGCCCGGAGAGAGGATTCCATCCTCATAAGGCCCCTCTAGATGGTTCACCA
ATTTATGAGCATTGCTCCCATGTGTATATGAACCCCGATGTAAAGTTTGATGTGATTGACCTTCGATAATGGTGAGAACT
CCATCCGCGAAAGACTGGCAGCTGAACAAGTTGGCTGCCTTTATTTTTTTAACTGTGCTGAAGAATCTCGAATACCGATG
TAAGTGATTGTACATAGCTATTTGCATGTATAGAGTTCCGTTGAAATGAATATCTTCGGTATCTATGGGGAATTTATGAA
TTTATTGTATTTCATTATACTCACTTAGCTCTCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis