Browse Element(s) Details


OsAffx.18389.2.S1_at

Description tigr:9629.m02279
TID=OsAffx.18389.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2365011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23620Os.10984.1.S1_at11/111+13268584..13270947GTP-binding protein SAR1A, putative, expressed
LOC_Os01g23630OsAffx.23355.1.S1_s_at11/111+13274139..13276948Transcription initiation factor IID, 18kD subunit family protein
LOC_Os01g23640Os.7156.1.S1_at11/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23640OsAffx.18527.1.S1_at8/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23650OsAffx.18389.2.S1_at11/111+13292459..13292797hypothetical protein
LOC_Os01g23660NANA1+13294254..13294856hypothetical protein
LOC_Os01g23670NANA1+13296915..13297872retrotransposon protein, putative, unclassified
LOC_Os01g23680Os.19014.1.S1_at10/111+13301776..13306281expressed protein
LOC_Os01g23680Os.47705.1.A1_at9/111+13301776..13306281expressed protein
LOC_Os01g23690OsAffx.23356.1.S1_at11/111+13309905..13310644hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18389.2.S1_at--1077--1071Chr01:13292489..13292513 (25 bp)
AGTGTCCTCGGTGCGTCATTCTGGA
LOC_Os01g23650
OsAffx.18389.2.S1_at--1038--9571Chr01:13292504..13292528 (25 bp)
TCATTCTGGAGGTTCGCCTACTTCA
LOC_Os01g23650
OsAffx.18389.2.S1_at--519--8552Chr01:13292510..13292534 (25 bp)
TGGAGGTTCGCCTACTTCATCGACG
LOC_Os01g23650
OsAffx.18389.2.S1_at--585--9611Chr01:13292526..13292550 (25 bp)
TCATCGACGGTGATCTTAGGAGCTT
LOC_Os01g23650
OsAffx.18389.2.S1_at--10--451Chr01:13292538..13292562 (25 bp)
ATCTTAGGAGCTTCGTGTGGCTCGG
LOC_Os01g23650
OsAffx.18389.2.S1_at--608--7711Chr01:13292588..13292612 (25 bp)
GGTGGTCGGAAGAGCACCACTACCC
LOC_Os01g23650
OsAffx.18389.2.S1_at--328--5071Chr01:13292694..13292718 (25 bp)
GCAGCGGCGAGACTGTCAACGACAA
LOC_Os01g23650
OsAffx.18389.2.S1_at--945--4611Chr01:13292700..13292724 (25 bp)
GCGAGACTGTCAACGACAAGGCCGC
LOC_Os01g23650
OsAffx.18389.2.S1_at--155--4531Chr01:13292720..13292744 (25 bp)
GCCGCCGCAATCATGACCACTGATA
LOC_Os01g23650
OsAffx.18389.2.S1_at--581--691Chr01:13292732..13292756 (25 bp)
ATGACCACTGATACCATCCATTTCA
LOC_Os01g23650
OsAffx.18389.2.S1_at--494--311Chr01:13292742..13292766 (25 bp)
ATACCATCCATTTCACGCTTCTCAA
LOC_Os01g23650
Target Sequence 
AGTGTCCTCGGTGCGTCATTCTGGAGGTTCGCCTACTTCATCGACGGTGATCTTAGGAGCTTCGTGTGGCTCGGCGACGC
CGCGGCGCCGGCGCAAGGTGGTGGTCGGAAGAGCACCACTACCCCGCTCATCCCAGTCGGCGTCGACAAGGCGCCGAACA
TTGACCCTAACCTCTACTTCGTCGCCATCACCGGCATCAAGGTCGGCAGCGGCGAGACTGTCAACGACAAGGCCGCCGCA
ATCATGACCACTGATACCATCCATTTCACGCTTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18389.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis