Browse Element(s) Details


OsAffx.23356.1.S1_at

Description tigr:9629.m02284
TID=OsAffx.23356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2369011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23640Os.7156.1.S1_at11/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23640OsAffx.18527.1.S1_at8/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23650OsAffx.18389.2.S1_at11/111+13292459..13292797hypothetical protein
LOC_Os01g23660NANA1+13294254..13294856hypothetical protein
LOC_Os01g23670NANA1+13296915..13297872retrotransposon protein, putative, unclassified
LOC_Os01g23680Os.19014.1.S1_at10/111+13301776..13306281expressed protein
LOC_Os01g23680Os.47705.1.A1_at9/111+13301776..13306281expressed protein
LOC_Os01g23690OsAffx.23356.1.S1_at11/111+13309905..13310644hypothetical protein
LOC_Os01g23700NANA1+13322756..13323202hypothetical protein
LOC_Os01g23710Os.17912.2.S1_x_at11/111+13325360..13328373expressed protein
LOC_Os01g23710OsAffx.20377.1.S1_x_at6/111+13325360..13328373expressed protein
LOC_Os01g23710Os.46681.1.S1_at1/111+13325360..13328373expressed protein
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23356.1.S1_at--311--5291Chr01:13310207..13310231 (25 bp)
GAAGGCAGTGGCACGGACACGGACG
LOC_Os01g23690
OsAffx.23356.1.S1_at--270--811Chr01:13310316..13310340 (25 bp)
ATGGTGTTTTTGAGATCGAGTTCTT
LOC_Os01g23690
OsAffx.23356.1.S1_at--565--6031Chr01:13310327..13310351 (25 bp)
GAGATCGAGTTCTTTAACCCGCCGG
LOC_Os01g23690
OsAffx.23356.1.S1_at--926--7571Chr01:13310350..13310374 (25 bp)
GGGCTCCAATGATACCTACGTCAGG
LOC_Os01g23690
OsAffx.23356.1.S1_at--475--6471Chr01:13310360..13310423 (25 bp)
GATACCTACGTCAGGGTTGTCAACC
LOC_Os01g23690
OsAffx.23356.1.S1_at--304--1891Chr01:13310367..13310430 (25 bp)
ACGTCAGGGTTGTCAACCGCGCCGA
LOC_Os01g23690
OsAffx.23356.1.S1_at--347--9431Chr01:13310505..13310529 (25 bp)
TCGTGTGGTTGGTCTCGCCGATGGC
LOC_Os01g23690
OsAffx.23356.1.S1_at--843--7351Chr01:13310534..13310558 (25 bp)
GTGAAAGGATCGTGCGCGGCCAGGA
LOC_Os01g23690
OsAffx.23356.1.S1_at--632--8231Chr01:13310570..13310594 (25 bp)
GGCAACTGGGTCGTCACCGATATGA
LOC_Os01g23690
OsAffx.23356.1.S1_at--130--7691Chr01:13310577..13310601 (25 bp)
GGGTCGTCACCGATATGATGCTTAA
LOC_Os01g23690
OsAffx.23356.1.S1_at--713--9671Chr01:13310583..13310607 (25 bp)
TCACCGATATGATGCTTAAGACGAC
LOC_Os01g23690
Target Sequence 
GAAGGCAGTGGCACGGACACGGACGGAGGGGATTGGGGAGGTGGCATGGGCACGGATAAGGGTGTTGGCGAGGAAGGCGT
CGAGCAGGACAGAGGGGCGGAGGTGGACAATGGTGTTTTTGAGATCGAGTTCTTTAACCCGCCGGGCTCCAATGATACCT
ACGTCAGGGTTGTCAACCGCGCCGACCAGGTCCCAGGCCCCGTTGGCGCCACGCTGTCCATGTCCCGCGGCTGCGAGCTC
GCCGACGCTAACTCCACCGTCGTGTGGTTGGTCTCGCCGATGGCGGCGGTGAAAGGATCGTGCGCGGCCAGGATACGGGA
CGACGGCAACTGGGTCGTCACCGATATGATGCTTAAGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis