Browse Element(s) Details


Os.19014.1.S1_at

Description gb:AK066580.1
DB_XREF= gi:32976598
TID=Os.19014.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069G24, full insert sequence.
FL= gb:AK066580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2368010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23630OsAffx.23355.1.S1_s_at11/111+13274139..13276948Transcription initiation factor IID, 18kD subunit family protein
LOC_Os01g23640Os.7156.1.S1_at11/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23640OsAffx.18527.1.S1_at8/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23650OsAffx.18389.2.S1_at11/111+13292459..13292797hypothetical protein
LOC_Os01g23660NANA1+13294254..13294856hypothetical protein
LOC_Os01g23670NANA1+13296915..13297872retrotransposon protein, putative, unclassified
LOC_Os01g23680Os.19014.1.S1_at10/111+13301776..13306281expressed protein
LOC_Os01g23680Os.47705.1.A1_at9/111+13301776..13306281expressed protein
LOC_Os01g23690OsAffx.23356.1.S1_at11/111+13309905..13310644hypothetical protein
LOC_Os01g23700NANA1+13322756..13323202hypothetical protein
LOC_Os01g23710Os.17912.2.S1_x_at11/111+13325360..13328373expressed protein
LOC_Os01g23710OsAffx.20377.1.S1_x_at6/111+13325360..13328373expressed protein
LOC_Os01g23710Os.46681.1.S1_at1/111+13325360..13328373expressed protein
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19014.1.S1_at--953--7551Chr01:13303681..13303705 (25 bp)
GGGACTAATGCAGCTGTTATCCGGG
LOC_Os01g23680
Os.19014.1.S1_at--260--5531Chr01:13303642..13303666 (25 bp)
GAAAAGCCAGAGTTGCTCACTGTAA
LOC_Os01g23680
Os.19014.1.S1_at--957--6671Chr01:13303631..13303655 (25 bp)
GTTGCTCACTGTAATTTTACCTCAA
LOC_Os01g23680
Os.19014.1.S1_at--950--2831Chr01:13303607..13303631 (25 bp)
AAGTCTAAAGAAGCAACCTCCTGAA
LOC_Os01g23680
Os.19014.1.S1_at--1069--5151Chr01:13303595..13303619 (25 bp)
GCAACCTCCTGAAAGTCAAGAGCTT
LOC_Os01g23680
Os.19014.1.S1_at--518--2711Chr01:13301863..13301887 (25 bp)
AAGCTTGTCGATATGTCTGGTTCAT
LOC_Os01g23680
Os.19014.1.S1_at--1148--4031Chr01:13301855..13301879 (25 bp)
CGATATGTCTGGTTCATCATTGAAT
LOC_Os01g23680
Os.19014.1.S1_at--367--2831Chr01:13301819..13301843 (25 bp)
AAGTTCTTACTATTTCTGACCTGTG
LOC_Os01g23680
Os.19014.1.S1_at--755--10471Chr01:13301813..13301837 (25 bp)
TTACTATTTCTGACCTGTGGCCTGG
LOC_Os01g23680
Os.19014.1.S1_at--672--8651Chr01:13301798..13301822 (25 bp)
TGTGGCCTGGCTACTTTTTATTTGA
LOC_Os01g23680
Os.19014.1.S1_at--121--8871Chr01:13301776..13301800 (25 bp)
TGAGAGGGTTTAGCTATTATTTTGC
NONE
Target Sequence 
GGGACTAATGCAGCTGTTATCCGGGGTGCTTTAAGGGCTGAAAAGCCAGAGTTGCTCACTGTAATTTTACCTCAAAGTCT
AAAGAAGCAACCTCCTGAAAGTCAAGAGCTTTTATCTAAAGTACAAAACTTAATTGAGAAGCCTCAATATGACCATTTGC
CACTAATTGAAGCGAGCAGGTTATGCAACATGGACATCATCTCGAAGGTCCAACAGGTGATTTGTTTTGCATTCCATGAC
AGCAAGCTGCTGATGGAGACCTGCCAGGAGGCCAAGAATCTCCGGAAGATCGTAACCCTATTCTACTTGGATTAGCTCCT
CAGGGGCTTCGCCCCCATTTTTGTCTGTAGGCTGGTTGGTGATAGAATATTTGGTTCAGTTAGCTGTGTTCACTCTGAAA
CTCAGGAATGACACAGCCGAATAGGTGCAACCTTCAAANCGGGGAAGATCCTTTCGACCATTGTTTTGAATTTTGTATAA
ACCAAATAAGCTTGTCGATATGTCTGGTTCATCATTGAATGGAATAATTTAAAGTTCTTACTATTTCTGACCTGTGGCCT
GGCTACTTTTTATTTGAGAGGGTTTAGCTATTATTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis