Browse Element(s) Details


OsAffx.23355.1.S1_s_at

Description gb:NM_183917.1
DB_XREF= gi:34894961
GEN=P0487E11.18
TID=OsAffx.23355.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0487E11.18 (P0487E11.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2363011/11Transcription initiation factor IID, 18kD subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23600Os.49392.1.S2_at11/111+13247411..13249150expressed protein
LOC_Os01g23610Os.20630.1.S1_at9/111+13255095..13264539Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os01g23620Os.10984.1.S1_at11/111+13268584..13270947GTP-binding protein SAR1A, putative, expressed
LOC_Os01g23630OsAffx.23355.1.S1_s_at11/111+13274139..13276948Transcription initiation factor IID, 18kD subunit family protein
LOC_Os01g23640Os.7156.1.S1_at11/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23640OsAffx.18527.1.S1_at8/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23650OsAffx.18389.2.S1_at11/111+13292459..13292797hypothetical protein
LOC_Os01g23660NANA1+13294254..13294856hypothetical protein
LOC_Os01g23670NANA1+13296915..13297872retrotransposon protein, putative, unclassified
LOC_Os01g23680Os.19014.1.S1_at10/111+13301776..13306281expressed protein
LOC_Os01g23680Os.47705.1.A1_at9/111+13301776..13306281expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005667cellular_componenttranscription factor complex
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23355.1.S1_s_at--1011--9431Chr01:13274175..13274199 (25 bp)
TCGGCGGCCAAGTCCAAGTCCTCGA
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--322--5171Chr01:13274317..13274341 (25 bp)
GCAAGCGCGGCGTCTTCCAGAAAGA
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--695--5831Chr01:13274429..13274449 (21 bp)
GACCTGCAGCACATGATGTACGGAT
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--357--5551Chr01:13274728..13274752 (25 bp)
GAAACTGTTGCACTTGTGGAGGACA
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--666--5231Chr01:13274761..13274780 (20 bp)
GAATATGTCACTGACCTGGTCCACA
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--185--2951Chr01:13276680..13276704 (25 bp)
AAGGCCCAGAACGTTGCATCAAAGA
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--525--7611Chr01:13276706..13276730 (25 bp)
GGGCAAGCTCTTGACAGAAGATTTT
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--755--2811Chr01:13276723..13276747 (25 bp)
AAGATTTTCTTTACCTCATTCGCAA
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--850--9971Chr01:13276734..13276844 (25 bp)
TACCTCATTCGCAAGGATGTGCGGA
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--1143--6251Chr01:13276835..13276859 (25 bp)
GATGTGCGGAAACTGCACCGTGCCA
LOC_Os01g23630
OsAffx.23355.1.S1_s_at--208--4371Chr01:13276857..13276881 (25 bp)
CCACTGAGCTACTCTCCATGAATGA
LOC_Os01g23630
Target Sequence 
TCGGCGGCCAAGTCCAAGTCCTCGACCGCTGCCGCCGCGTCGGCGTCGGGCCAGGGGAGCTCCCACCACCACCACCACCA
CCACTCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCCGACGCGTCCGCCACCACCCTCAAGCGCAAGCGCGGCGTCTTCC
AGAAAGACCTGCAGCACATGATGTACGGATTTGGGGATGATCCAAATCCGCTTCCAGAAACTGTTGCACTTGTGGAGGAC
ATTGTTGTAGAATATGTCACTGACCTGGTCCACAAGGCCCAGAACGTTGCATCAAAGAGGGGCAAGCTCTTGACAGAAGA
TTTTCTTTACCTCATTCGCAAGGATGTGCGGAAACTGCACCGTGCCACTGAGCTACTCTCCATGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23355.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis