Browse Element(s) Details


OsAffx.2069.1.S1_at

Description tigr:9629.m02296
TID=OsAffx.2069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2380011/11hypothetical protein
LOC_Os08g289301/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23770OsAffx.11177.1.S1_at11/111+13348897..13350191SRF-type transcription factor family protein
LOC_Os01g23780OsAffx.11178.1.S1_x_at11/111+13356101..13357146expressed protein
LOC_Os01g23780OsAffx.11178.1.S1_at11/111+13356101..13357146expressed protein
LOC_Os01g23790OsAffx.23359.1.S1_at11/111+13357323..13357904hypothetical protein
LOC_Os01g23800OsAffx.2069.1.S1_at11/111+13372480..13374717hypothetical protein
LOC_Os01g23810OsAffx.23360.1.S1_at11/111+13378745..13379590expressed protein
LOC_Os01g23820NANA1+13384405..13384863retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23830NANA1+13393241..13394572hypothetical protein
LOC_Os01g23840OsAffx.22853.1.S1_at11/111+13396899..13397713transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2069.1.S1_at--892--2811Chr01:13374185..13374647 (25 bp)
AAGTCGGTGAACAGGCAATCTCAGG
LOC_Os01g23800
OsAffx.2069.1.S1_at--857--231Chr01:13374146..13374170 (25 bp)
ATAGTTACCTCATGACATTTCCCCA
LOC_Os01g23800
OsAffx.2069.1.S1_at--68--5671Chr01:13374133..13374157 (25 bp)
GACATTTCCCCATAGGACAATTATT
LOC_Os01g23800
OsAffx.2069.1.S1_at--991--2451Chr01:13373241..13373265 (25 bp)
AACAATGTTACATCTCTCATGCCCA
LOC_Os01g23800
OsAffx.2069.1.S1_at--974--451Chr01:13373230..13373254 (25 bp)
ATCTCTCATGCCCATAGGCCAAGAT
LOC_Os01g23800
OsAffx.2069.1.S1_at--569--2791Chr01:13373210..13373234 (25 bp)
AAGATGGACTGATGTCCCTTGGCCC
LOC_Os01g23800
OsAffx.2069.1.S1_at--1070--10851Chr01:13373192..13373216 (25 bp)
TTGGCCCCGCATTAGCTATGACCCA
LOC_Os01g23800
OsAffx.2069.1.S1_at--182--1831Chr01:13373105..13373129 (25 bp)
ACGCCCATACCTATGATTATCCCAT
LOC_Os01g23800
OsAffx.2069.1.S1_at--1036--832Chr08:17556447..17556471 (25 bp)
ATGGAGTCCATGTTCACTGTTGGTT
LOC_Os08g28930
OsAffx.2069.1.S1_at--1086--6611Chr01:13372574..13372598 (25 bp)
GTTGGTTCATTTACCTATTTACTGA
LOC_Os01g23800
OsAffx.2069.1.S1_at--645--1971Chr01:13372554..13372578 (25 bp)
ACTGACTTTGTTACTGGTGATACCG
LOC_Os01g23800
Target Sequence 
AAGTCGGTGAACAGGCAATCTCAGGACAAATTCAAGCATATAGTTACCTCATGACATTTCCCCATAGGACAATTATTGGT
ATGGACATGCTGATGATATCTAACAATGTTACATCTCTCATGCCCATAGGCCAAGATGGACTGATGTCCCTTGGCCCCGC
ATTAGCTATGACCCACACGCCCATACCTATGATTATCCCATGGGGCAATGTCATGAGGAGGTTCTACATCATCTATGGAG
TCCATGTTCACTGTTGGTTCATTTACCTATTTACTGACTTTGTTACTGGTGATACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis