Browse Element(s) Details


OsAffx.23359.1.S1_at

Description gb:NM_183932.1
DB_XREF= gi:34894991
GEN=B1088D01.18
TID=OsAffx.23359.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1088D01.18 (B1088D01.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2379011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23740Os.17269.1.S1_at11/111+13336110..13339991protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os01g23750OsAffx.2068.1.S1_at11/111+13342598..13343818hypothetical protein
LOC_Os01g23760OsAffx.23358.1.S1_at11/111+13346188..13347411SRF-type transcription factor family protein
LOC_Os01g23770OsAffx.11177.1.S1_at11/111+13348897..13350191SRF-type transcription factor family protein
LOC_Os01g23780OsAffx.11178.1.S1_x_at11/111+13356101..13357146expressed protein
LOC_Os01g23780OsAffx.11178.1.S1_at11/111+13356101..13357146expressed protein
LOC_Os01g23790OsAffx.23359.1.S1_at11/111+13357323..13357904hypothetical protein
LOC_Os01g23800OsAffx.2069.1.S1_at11/111+13372480..13374717hypothetical protein
LOC_Os01g23810OsAffx.23360.1.S1_at11/111+13378745..13379590expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23359.1.S1_at--1100--8031Chr01:13357735..13357759 (25 bp)
GGAGATCTCGATTTGGTGCTGCTAC
LOC_Os01g23790
OsAffx.23359.1.S1_at--974--211Chr01:13357725..13357749 (25 bp)
ATTTGGTGCTGCTACTCTGGACGAC
LOC_Os01g23790
OsAffx.23359.1.S1_at--666--7311Chr01:13357720..13357744 (25 bp)
GTGCTGCTACTCTGGACGACGGTGA
LOC_Os01g23790
OsAffx.23359.1.S1_at--419--1331Chr01:13357612..13357636 (25 bp)
AGAGGTCCTCCCCTAGAGATGGCAA
LOC_Os01g23790
OsAffx.23359.1.S1_at--1005--7191Chr01:13357608..13357632 (25 bp)
GTCCTCCCCTAGAGATGGCAAGCCT
LOC_Os01g23790
OsAffx.23359.1.S1_at--288--851Chr01:13357594..13357618 (25 bp)
ATGGCAAGCCTCGAATGGACGGCCG
LOC_Os01g23790
OsAffx.23359.1.S1_at--120--7651Chr01:13357568..13357592 (25 bp)
GGGAGGGTAGGCAGCTTCATCTTCC
LOC_Os01g23790
OsAffx.23359.1.S1_at--510--6934Chr09:20434326..20434347 (22 bp)
GTAGGCAGCTTCATCTTCCCTGCTT
NONE
OsAffx.23359.1.S1_at--1105--1611Chr01:13357499..13357523 (25 bp)
AGCGGCCTCCCTATCACGATGCAGG
LOC_Os01g23790
OsAffx.23359.1.S1_at--157--4191Chr01:13357491..13357515 (25 bp)
CCCTATCACGATGCAGGGAGGAGAC
LOC_Os01g23790
OsAffx.23359.1.S1_at--306--1911Chr01:13357353..13357377 (25 bp)
ACGGTGGCGGCAACAGGTCCAGTCG
LOC_Os01g23790
Target Sequence 
GGAGATCTCGATTTGGTGCTGCTACTCTGGACGACGGTGAGGAAGCAAAGAAGAGGTCCTCCCCTAGAGATGGCAAGCCT
CGAATGGACGGCCGCGGGAGGGTAGGCAGCTTCATCTTCCCTGCTTCGTCTCCACTCGTCGTCGGCTTGNTNNAGCTTAT
ATCCAGCGGCCTCCCTATCACGATGCAGGGAGGAGACGGCGAGGCCGCCCCCATGGCTTCGCCTACTGGTCTTCCGGCCT
GCCTGACCGTGCGGGGCGAGCCCTCGGTGCCGCGCGGAGACGAGGGAAGGGCGATGAGGACGGGGCTGGAACGGTGGCGG
CAACAGGTCCAGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis