Browse Element(s) Details


OsAffx.11178.1.S1_x_at

Description tigr:9629.m02294
TID=OsAffx.11178.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2378011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified
LOC_Os01g23740Os.17269.1.S1_at11/111+13336110..13339991protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os01g23750OsAffx.2068.1.S1_at11/111+13342598..13343818hypothetical protein
LOC_Os01g23760OsAffx.23358.1.S1_at11/111+13346188..13347411SRF-type transcription factor family protein
LOC_Os01g23770OsAffx.11177.1.S1_at11/111+13348897..13350191SRF-type transcription factor family protein
LOC_Os01g23780OsAffx.11178.1.S1_x_at11/111+13356101..13357146expressed protein
LOC_Os01g23780OsAffx.11178.1.S1_at11/111+13356101..13357146expressed protein
LOC_Os01g23790OsAffx.23359.1.S1_at11/111+13357323..13357904hypothetical protein
LOC_Os01g23800OsAffx.2069.1.S1_at11/111+13372480..13374717hypothetical protein
LOC_Os01g23810OsAffx.23360.1.S1_at11/111+13378745..13379590expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11178.1.S1_x_at--927--931Chr01:13356282..13356306 (25 bp)
AGGAGGGCGTCCTCGCCTCGTACCG
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--555--9191Chr01:13356315..13356339 (25 bp)
TGCCTAGGCCGGAGGCGCACACGCT
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--559--2171Chr01:13356333..13356357 (25 bp)
ACACGCTCCGAGAGTGCCTCGAGTT
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--555--1131Chr01:13356345..13356369 (25 bp)
AGTGCCTCGAGTTGAAGCTCGCCAG
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--644--2691Chr01:13356380..13356404 (25 bp)
AAGCTCGCCATGGTGCGGCAGTGCC
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--153--8271Chr01:13356396..13356420 (25 bp)
GGCAGTGCCGCGATCTCTGCGTGCA
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--342--9491Chr01:13356411..13356435 (25 bp)
TCTGCGTGCACCTGTGGGATGACAC
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--38--1771Chr01:13356420..13356444 (25 bp)
ACCTGTGGGATGACACGGTCAGCTA
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--790--671Chr01:13356429..13356453 (25 bp)
ATGACACGGTCAGCTACATCAGTAC
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--783--3951Chr01:13356435..13356459 (25 bp)
CGGTCAGCTACATCAGTACGGCGGA
LOC_Os01g23780
OsAffx.11178.1.S1_x_at--1066--3391Chr01:13356439..13356463 (25 bp)
CAGCTACATCAGTACGGCGGAGGAG
LOC_Os01g23780
Target Sequence 
AGGAGGGCGTCCTCGCCTCGTACCGCGCCATCCTGCCTAGGCCGGAGGCGCACACGCTCCGAGAGTGCCTCGAGTTGAAG
CTCGCCAGGGAGAGGGCCAAGCTCGCCATGGTGCGGCAGTGCCGCGATCTCTGCGTGCACCTGTGGGATGACACGGTCAG
CTACATCAGTACGGCGGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11178.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis