Browse Element(s) Details


OsAffx.2068.1.S1_at

Description tigr:9629.m02291
TID=OsAffx.2068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2375011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23700NANA1+13322756..13323202hypothetical protein
LOC_Os01g23710Os.17912.2.S1_x_at11/111+13325360..13328373expressed protein
LOC_Os01g23710OsAffx.20377.1.S1_x_at6/111+13325360..13328373expressed protein
LOC_Os01g23710Os.46681.1.S1_at1/111+13325360..13328373expressed protein
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified
LOC_Os01g23740Os.17269.1.S1_at11/111+13336110..13339991protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os01g23750OsAffx.2068.1.S1_at11/111+13342598..13343818hypothetical protein
LOC_Os01g23760OsAffx.23358.1.S1_at11/111+13346188..13347411SRF-type transcription factor family protein
LOC_Os01g23770OsAffx.11177.1.S1_at11/111+13348897..13350191SRF-type transcription factor family protein
LOC_Os01g23780OsAffx.11178.1.S1_x_at11/111+13356101..13357146expressed protein
LOC_Os01g23780OsAffx.11178.1.S1_at11/111+13356101..13357146expressed protein
LOC_Os01g23790OsAffx.23359.1.S1_at11/111+13357323..13357904hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2068.1.S1_at--666--3011Chr01:13343232..13343256 (25 bp)
AATGCACCGGCGACTACCGCGTGGA
LOC_Os01g23750
OsAffx.2068.1.S1_at--827--1691Chr01:13343247..13343271 (25 bp)
ACCGCGTGGACATGGACGGCTACGT
LOC_Os01g23750
OsAffx.2068.1.S1_at--760--7991Chr01:13343284..13343308 (25 bp)
GGATGATGCCAACGCCTACCATGGC
LOC_Os01g23750
OsAffx.2068.1.S1_at--780--3491Chr01:13343303..13343327 (25 bp)
CATGGCTGGCCCGATGAGGCAATGT
LOC_Os01g23750
OsAffx.2068.1.S1_at--415--5191Chr01:13343321..13343345 (25 bp)
GCAATGTGGTGCACCGACGAGTCGT
LOC_Os01g23750
OsAffx.2068.1.S1_at--314--5451Chr01:13343485..13343509 (25 bp)
GAACGACTTTCTCACCGTGGGCGTC
LOC_Os01g23750
OsAffx.2068.1.S1_at--196--8391Chr01:13343645..13343669 (25 bp)
GGCGACACGCAGTCCCATAGCTGGG
LOC_Os01g23750
OsAffx.2068.1.S1_at--705--7631Chr01:13343670..13343694 (25 bp)
GGGACTACTACTTGGCGCAGAGCTC
LOC_Os01g23750
OsAffx.2068.1.S1_at--1065--5031Chr01:13343686..13343710 (25 bp)
GCAGAGCTCCGCCAATGAGTGCCAG
LOC_Os01g23750
OsAffx.2068.1.S1_at--504--5671Chr01:13343732..13343756 (25 bp)
GACATCCATCTCGATCAGACGCATT
LOC_Os01g23750
OsAffx.2068.1.S1_at--78--391Chr01:13343745..13343769 (25 bp)
ATCAGACGCATTGCCTCGGTGGTGC
LOC_Os01g23750
Target Sequence 
AATGCACCGGCGACTACCGCGTGGACATGGACGGCTACGTGTGGGGAGCCCCGGATGATGCCAACGCCTACCATGGCTGG
CCCGATGAGGCAATGTGGTGCACCGACGAGTCGTGCTCGTGCAACGCCGCCACCGCCACCGCCGTGCCAGCCATGTATCA
TCCCCCCACCCTGGACACCGTCCACGGGAGCTTCCTCGCCGCGCCAGCTCAACCACTCGCCTTCAGCACCGGCGCCGACT
TCATCAACGCGCCGAACGACTTTCTCACCGTGGGCGTCGGCGGCAGCTTCATCAACGTCGGCGACTACTCGGCGCAGAGC
TTGGCCGACGAGTTCCACCACCTCAGCGACGCCACCAACCAGCTCGATCAGACGCACTACCCACCATTCGGTGGAACGGG
CGGCGCCGAGCCCGGCGACACGCAGTCCCATAGCTGGGGGGACTACTACTTGGCGCAGAGCTCCGCCAATGAGTGCCAGC
TGCTCGGCGTCGACGGCGGCGACATCCATCTCGATCAGACGCATTGCCTCGGTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis