Browse Element(s) Details


Os.17269.1.S1_at

Description gb:AK066111.1
DB_XREF= gi:32976129
TID=Os.17269.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein disulfide isomerase (B1088D01.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050J24, full insert sequence.
FL= gb:AK066111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2374011/11protein disulfide-isomerase A6 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23700NANA1+13322756..13323202hypothetical protein
LOC_Os01g23710Os.17912.2.S1_x_at11/111+13325360..13328373expressed protein
LOC_Os01g23710OsAffx.20377.1.S1_x_at6/111+13325360..13328373expressed protein
LOC_Os01g23710Os.46681.1.S1_at1/111+13325360..13328373expressed protein
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified
LOC_Os01g23740Os.17269.1.S1_at11/111+13336110..13339991protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os01g23750OsAffx.2068.1.S1_at11/111+13342598..13343818hypothetical protein
LOC_Os01g23760OsAffx.23358.1.S1_at11/111+13346188..13347411SRF-type transcription factor family protein
LOC_Os01g23770OsAffx.11177.1.S1_at11/111+13348897..13350191SRF-type transcription factor family protein
LOC_Os01g23780OsAffx.11178.1.S1_x_at11/111+13356101..13357146expressed protein
LOC_Os01g23780OsAffx.11178.1.S1_at11/111+13356101..13357146expressed protein
LOC_Os01g23790OsAffx.23359.1.S1_at11/111+13357323..13357904hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17269.1.S1_at--273--6851Chr01:13339187..13339211 (25 bp)
GTTTGGATGCCCTCGCAAAGGAGTT
LOC_Os01g23740
Os.17269.1.S1_at--363--4831Chr01:13339275..13339296 (22 bp)
GCTCAGTGGTTCTGCTGCAAAGCAT
LOC_Os01g23740
Os.17269.1.S1_at--169--8151Chr01:13339391..13339415 (25 bp)
GGAAAGGTCTACATTGCCATTGCAA
LOC_Os01g23740
Os.17269.1.S1_at--66--8071Chr01:13339480..13339610 (25 bp)
GGAGAAGTCCATCAGCCCATCAAAG
LOC_Os01g23740
Os.17269.1.S1_at--933--5351Chr01:13339631..13339655 (25 bp)
GAAGAACGTCCTTTCAACCTTCTCT
LOC_Os01g23740
Os.17269.1.S1_at--124--2631Chr01:13339646..13339670 (25 bp)
AACCTTCTCTTCCTAAGGCGATGTC
LOC_Os01g23740
Os.17269.1.S1_at--539--7091Chr01:13339668..13339692 (25 bp)
GTCAAACTCCATTCTTATCTTTGGG
LOC_Os01g23740
Os.17269.1.S1_at--597--2971Chr01:13339728..13339752 (25 bp)
AATGTATTCATGAGAGGCCGTTGGC
LOC_Os01g23740
Os.17269.1.S1_at--353--7491Chr01:13339768..13339792 (25 bp)
GTGGGTTTTCCCTTAAGCATACATG
LOC_Os01g23740
Os.17269.1.S1_at--873--331Chr01:13339786..13339810 (25 bp)
ATACATGTATCCTATTGCCTGGTGC
LOC_Os01g23740
Os.17269.1.S1_at--668--4471Chr01:13339802..13339826 (25 bp)
GCCTGGTGCGGATGTTTTAATTCTT
LOC_Os01g23740
Target Sequence 
GTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTGCCAATGACAAGCGGAAGGAAATCCTCTCCAATATGGAAGAGGAG
GTTGTGAAGCTCAGTGGTTCTGCTGCAAAGCATGGAAAGGTCTACATTGCCATTGCAAAGAAAATCCTGGACAAAGGTCA
CGACTATACCAAGAAGGAAACAGAGAGGCTTGAACGCATGTTGGAGAAGTCCATCAGCCCATCAAAGGCCGATGAATTCA
TCATCAAGAAGAACGTCCTTTCAACCTTCTCTTCCTAAGGCGATGTCAAACTCCATTCTTATCTTTGGGATATAGGTATA
AGGGAAAATGACAGAAAGATTAGGAATGTATTCATGAGAGGCCGTTGGCGGTAGAACTAATTTTGTGGGTTTTCCCTTAA
GCATACATGTATCCTATTGCCTGGTGCGGATGTTTTAATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis