Browse Element(s) Details


OsAffx.20742.3.S1_x_at

Description tigr:9638.m00516
TID=OsAffx.20742.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC084884 Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0603011/11Protein kinase domain containing protein
LOC_Os10g061407/11Protein kinase domain containing protein, expressed
LOC_Os04g120801/11Protein kinase domain containing protein, expressed
LOC_Os04g121801/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06010OsAffx.20745.1.S1_at11/1110+3030618..3034372retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06020OsAffx.30308.1.S1_at11/1110+3037734..3038419hypothetical protein
LOC_Os10g06030OsAffx.20742.3.S1_x_at11/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.4.S1_x_at9/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.2.S1_x_at8/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.29386.2.S1_at1/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06050Os.45161.1.A1_x_at1/1110+3057737..3060528retrotransposon protein, putative, unclassified
LOC_Os10g06070OsAffx.20604.2.S1_at11/1110+3064240..3066150retrotransposon protein, putative, unclassified
LOC_Os10g06080OsAffx.30311.1.S1_at10/1110+3068712..3069646hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20742.3.S1_x_at--543--8651Chr10:3049151..3049175 (25 bp)
TGGGCTTACGCCTAGACATCGCAAT
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--125--5252Chr10:3049177..3049201 (25 bp)
GAATCAGCTGAAGGTCTAAGGTACA
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--647--7012Chr10:3049197..3049221 (25 bp)
GTACATGCACTCATCAACAAGTCGT
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--30--5671Chr10:3049229..3049253 (25 bp)
GACATGGTGATGTCAAGCCGGCCAA
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--853--4471Chr10:3049245..3049269 (25 bp)
GCCGGCCAACATACTTTTAACAGAT
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--348--6813Chr10:3049272..3049296 (25 bp)
GTTTATCCCCAAGATCTCAGATTTT
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--541--6532Chr10:3049327..3049351 (25 bp)
GATTTCACCATGTTTGTTGTAGGAA
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--467--6352Chr10:3049366..3049390 (25 bp)
GATCCAGTATTCCATAAGACCGGCC
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--378--3572Chr10:3049378..3049402 (25 bp)
CATAAGACCGGCCATTTAACACAAA
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--278--8052Chr10:3049423..3049447 (25 bp)
GGAGTTGTACTGCTAGAGCTCATAT
LOC_Os10g06030
OsAffx.20742.3.S1_x_at--3--6072Chr10:3049492..3049516 (25 bp)
GAGTTCCAAAATGCCTATGATCAAG
LOC_Os10g06030
Target Sequence 
TGGGCTTACGCCTAGACATCGCAATTGAATCAGCTGAAGGTCTAAGGTACATGCACTCATCAACAAGTCGTACCATACGA
CATGGTGATGTCAAGCCGGCCAACATACTTTTAACAGATAAGTTTATCCCCAAGATCTCAGATTTTGGAACATCTAAGCT
TCTTAATGTAGACAAAGATTTCACCATGTTTGTTGTAGGAAGTATGGGCTACATAGATCCAGTATTCCATAAGACCGGCC
ATTTAACACAAAAGAGTGATGTATACAGTTTTGGAGTTGTACTGCTAGAGCTCATATGTAGAAAGCCAACAATATATGGT
GAAAATTGTAGCCTCATCATTGAGTTCCAAAATGCCTATGATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20742.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis