Browse Element(s) Details


OsAffx.20745.1.S1_at

Description gb:NM_194868.1
DB_XREF= gi:37531095
TID=OsAffx.20745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol precursor (OSJNBa0031A07.16), mRNA.
PROD=putative gag-pol precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0601011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_x_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.37820.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8018.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06010OsAffx.20745.1.S1_at11/1110+3030618..3034372retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06020OsAffx.30308.1.S1_at11/1110+3037734..3038419hypothetical protein
LOC_Os10g06030OsAffx.20742.3.S1_x_at11/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.4.S1_x_at9/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.2.S1_x_at8/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.29386.2.S1_at1/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06050Os.45161.1.A1_x_at1/1110+3057737..3060528retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20745.1.S1_at--1126--5691Chr10:3032974..3032998 (25 bp)
GACGTTTTTAGTACCATCAGGGAAG
LOC_Os10g06010
OsAffx.20745.1.S1_at--406--3471Chr10:3032957..3032981 (25 bp)
CAGGGAAGCTGCTTAGTTTCCTTGT
LOC_Os10g06010
OsAffx.20745.1.S1_at--1121--1191Chr10:3032943..3032967 (25 bp)
AGTTTCCTTGTCTCTAAGCGAGGTA
LOC_Os10g06010
OsAffx.20745.1.S1_at--737--2151Chr10:3032635..3032659 (25 bp)
ACACCCTATTCTGTTAGCACTGTCA
LOC_Os10g06010
OsAffx.20745.1.S1_at--779--7951Chr10:3032597..3032621 (25 bp)
GGATAAAGCACAACACCCGGTGTAC
LOC_Os10g06010
OsAffx.20745.1.S1_at--278--7751Chr10:3032579..3032603 (25 bp)
GGTGTACTATGTCAACGAGGCCCTC
LOC_Os10g06010
OsAffx.20745.1.S1_at--72--8411Chr10:3032565..3032585 (21 bp)
GGCCCTCCATGACGCCAAGGTAAAT
LOC_Os10g06010
OsAffx.20745.1.S1_at--124--10011Chr10:3031897..3031921 (25 bp)
TAGCTGGTTACATCGATTCTGGTTG
LOC_Os10g06010
OsAffx.20745.1.S1_at--527--5491Chr10:3031477..3031501 (25 bp)
GAACATATGGCATTTCGCGATGACG
LOC_Os10g06010
OsAffx.20745.1.S1_at--798--5791Chr10:3031456..3031480 (25 bp)
GACGAACAGTTCCTCTTGGACGAGA
LOC_Os10g06010
OsAffx.20745.1.S1_at--101--6191Chr10:3031387..3031411 (25 bp)
GAGGACCCAAACCAATACATGAATG
LOC_Os10g06010
Target Sequence 
GACGTTTTTAGTACCATCAGGGAAGCTGCTTAGTTTCCTTGTCTCTAAGCGAGGTATTAAGGCAAACCTAGAGAAGATCA
AGGCAATCGAGAACATGAATTCGCCCACAAGACTCAAGGAGCCAATGGAAGAGTTATTTCCTTATATTGCCGCCACACCC
TATTCTGTTAGCACTGTCATCGTTGTCGAGAGGGATAAAGCACAACACCCGGTGTACTATGTCAACGAGGCCCTCCATGA
CGCCAAGGTAAATGCAAATGATTTGTTTTATGGGATAGCTGGTTACATCGATTCTGGTTGGAGGACGGATCCAATGGAAC
ATATGGCATTTCGCGATGACGAACAGTTCCTCTTGGACGAGATCAATGAGAGTAGGCGTCAATACTGGGTGGATGAGGAG
GGAAACGAGGACCCAAACCAATACATGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis