Browse Element(s) Details


OsAffx.20746.1.S1_at

Description tigr:9638.m00507
TID=OsAffx.20746.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0594011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05890Os.48033.1.S1_at10/1110+2954960..2956626hypothetical protein
LOC_Os10g05890Os.52296.1.S1_at1/1110+2954960..2956626hypothetical protein
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20746.1.S1_at--848--871Chr10:2979601..2979625 (25 bp)
ATGGCCCTCGCGTGTGCGTCTCATT
LOC_Os10g05940
OsAffx.20746.1.S1_at--238--9351Chr10:2979608..2979632 (25 bp)
TCGCGTGTGCGTCTCATTTGCGCCG
LOC_Os10g05940
OsAffx.20746.1.S1_at--999--7291Chr10:2979614..2979638 (25 bp)
GTGCGTCTCATTTGCGCCGCCTCGG
LOC_Os10g05940
OsAffx.20746.1.S1_at--1093--4611Chr10:2979652..2979676 (25 bp)
GCGAGATCCTTCCACGCGCATCCGT
LOC_Os10g05940
OsAffx.20746.1.S1_at--511--1811Chr10:2979665..2979756 (25 bp)
ACGCGCATCCGTACCAAGCGTGATT
LOC_Os10g05940
OsAffx.20746.1.S1_at--882--4971Chr10:2979669..2979760 (25 bp)
GCATCCGTACCAAGCGTGATTCCTG
LOC_Os10g05940
OsAffx.20746.1.S1_at--759--6971Chr10:2979675..2979766 (25 bp)
GTACCAAGCGTGATTCCTGCGCGGC
LOC_Os10g05940
OsAffx.20746.1.S1_at--224--1711Chr10:2979748..2979768 (21 bp)
ACCAAGCGTGATTCCTGCGCGGCAG
LOC_Os10g05940
OsAffx.20746.1.S1_at--78--2691Chr10:2979748..2979771 (24 bp)
AAGCGTGATTCCTGCGCGGCAGCCA
LOC_Os10g05940
OsAffx.20746.1.S1_at--135--1631Chr10:2979748..2979772 (25 bp)
AGCGTGATTCCTGCGCGGCAGCCAA
LOC_Os10g05940
OsAffx.20746.1.S1_at--1075--10651Chr10:2979755..2979779 (25 bp)
TTCCTGCGCGGCAGCCAAGGTCGGC
LOC_Os10g05940
Target Sequence 
ATGGCCCTCGCGTGTGCGTCTCATTTGCGCCGCCTCGGAGCCGGAGCTCCGGCGAGATCCTTCCACGCGCATCCGTACCA
AGCGTGATTCCTGCGCGGCAGCCAAGGTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis