Browse Element(s) Details


OsAffx.21001.1.A1_at

Description gb:XM_354056.1
DB_XREF= gi:35189545
TID=OsAffx.21001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g369241/11Agamous-like MADS box protein AGL21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36890OsAffx.24606.3.S1_at11/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36890OsAffx.24606.2.S1_x_at1/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36900Os.43567.1.S1_x_at3/112+22284114..22284779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36900Os.38172.1.S1_x_at2/112+22284114..22284779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36910NANA2+22286425..22286958transposon protein, putative, unclassified
LOC_Os02g36924Os.49762.2.S1_a_at11/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36924Os.49762.1.S1_at10/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36924OsAffx.21001.1.A1_at1/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36940Os.17177.1.S1_at11/112+22305964..22307266expressed protein
LOC_Os02g36940OsAffx.22650.2.S1_x_at1/112+22305964..22307266expressed protein
LOC_Os02g36950Os.8146.1.S1_at11/112+22314003..22315404expressed protein
LOC_Os02g36950OsAffx.22650.1.S1_x_at1/112+22314003..22315404expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007584biological_processresponse to nutrient
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048497biological_processmaintenance of floral organ identity
GO:0048527biological_processlateral root development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21001.1.A1_at--681--9871Chr07:28156077..28156101 (25 bp)
TACAGTATATCGCAGGTTGGCGATC
NONE
OsAffx.21001.1.A1_at--342--251Chr07:28156083..28156107 (25 bp)
ATATCGCAGGTTGGCGATCGATCCC
NONE
OsAffx.21001.1.A1_at--524--5691Chr07:28156189..28156213 (25 bp)
GTTTCGGCCGGGAAGATGACGACCG
NONE
OsAffx.21001.1.A1_at--1001--6051Chr07:28156231..28156255 (25 bp)
GAGTTCGCCACGGTGTCCTCTCGTG
NONE
OsAffx.21001.1.A1_at--137--9411Chr07:28156251..28156275 (25 bp)
TCGTGCTCCCAGCTGGCAGATCGAT
NONE
OsAffx.21001.1.A1_at--810--4792Chr07:28156255..28156279 (25 bp)
GCTCCCAGCTGGCAGATCGATCGAT
NONE
OsAffx.21001.1.A1_at--129--6431Chr07:28156281..28156305 (25 bp)
GATCAGGCCCAATGTATCAGGGTGC
NONE
OsAffx.21001.1.A1_at--881--8391Chr07:28156286..28156310 (25 bp)
GGCCCAATGTATCAGGGTGCACATC
NONE
OsAffx.21001.1.A1_at--804--10151Chr07:28156295..28156319 (25 bp)
TATCAGGGTGCACATCCAAATCCTC
NONE
OsAffx.21001.1.A1_at--1042--2271Chr07:28156312..28156336 (25 bp)
AAATCCTCTACAAGCAGTCCTGCAT
NONE
OsAffx.21001.1.A1_at--757--3731Chr07:28156319..28156343 (25 bp)
CTACAAGCAGTCCTGCATTTAGTTC
NONE
Target Sequence 
TACAGTATATCGCAGGTTGGCGATCGATCCCCCTGCCACGTCAGCCCTCGCGTACGACGACGATCTCCGGCCACACGTCG
ATCCGTCGCCCTGGTCCAGCGCCGACGTCGACGTTTCGGCCGGGAAGATGACGACCGGAGACGACGACGTGGTCGAGTTC
GCCACGGTGTCCTCTCGTGCTCCCAGCTGGCAGATCGATCGATCGATCAGGCCCAATGTATCAGGGTGCACATCCAAATC
CTCTACAAGCAGTCCTGCATTTAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21001.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis