Browse Element(s) Details


OsAffx.21085.1.S1_at

Description gb:NM_194102.1
DB_XREF= gi:34915241
GEN=P0045F02.15
TID=OsAffx.21085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0045F02.15 (P0045F02.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1873011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g492908/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g283307/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18700OsAffx.29376.1.S1_x_at1/117+11049242..11052644plasma membrane sulphate transporter, putative
LOC_Os07g18710Os.30965.1.S1_at11/117+11058618..11060085F-box domain containing protein, expressed
LOC_Os07g18720Os.37765.1.S1_at10/117+11063192..11073589expressed protein
LOC_Os07g18720Os.11874.1.S1_s_at6/117+11063192..11073589expressed protein
LOC_Os07g18730OsAffx.21085.1.S1_at11/117+11075388..11078929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18739NANA7+11083129..11083356NA
LOC_Os07g18750Os.11212.1.S1_at11/117+11088829..11089564Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g18760OsAffx.30226.4.S1_x_at3/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.4.S1_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.1.S1_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.1.S1_x_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18770NANA7+11098469..11102512retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21085.1.S1_at--325--9512Chr07:11076594..11076618 (25 bp)
TCTCTGACCGCAGCAAGCCGATGGT
LOC_Os07g18730
OsAffx.21085.1.S1_at--361--6253Chr06:16096093..16096117 (25 bp)
GATGGTTCTCATCGGATACGCCGAC
LOC_Os06g28330
OsAffx.21085.1.S1_at--694--10633Chr06:16096139..16096163 (25 bp)
TTCGATCCGGTGTCTGGACGAGTGC
LOC_Os06g28330
OsAffx.21085.1.S1_at--719--1033Chr06:16096164..16096188 (25 bp)
AGGTCTCGCGCGACGTGATTTTCGA
LOC_Os06g28330
OsAffx.21085.1.S1_at--725--6153Chr06:16096245..16096269 (25 bp)
GAGGTTGCTCAGACTTCACCGTCGA
LOC_Os06g28330
OsAffx.21085.1.S1_at--766--7212Chr06:16096265..16096289 (25 bp)
GTCGAGTACCTGACAACGGCCACAT
LOC_Os06g28330
OsAffx.21085.1.S1_at--1101--4971Chr07:11076231..11076255 (25 bp)
GCATCGACGAGAACCTGGACGCGGA
LOC_Os07g18730
OsAffx.21085.1.S1_at--954--993Chr06:16096464..16096488 (25 bp)
AGGATGATTGTCCACTGCGTTATCG
LOC_Os06g28330
OsAffx.21085.1.S1_at--535--9153Chr06:16096479..16096503 (25 bp)
TGCGTTATCGCAGTATGGGTGATCT
LOC_Os06g28330
OsAffx.21085.1.S1_at--722--10112Chr07:11076176..11076200 (25 bp)
TATGGGTGATCTACTGGGCGACGCA
LOC_Os07g18730
OsAffx.21085.1.S1_at--1075--5951Chr07:11076085..11076109 (25 bp)
GAGAATTTTCTTCCGCGTCGCTCTG
LOC_Os07g18730
Target Sequence 
TCTCTGACCGCAGCAAGCCGATGGTTCTCATCGGATACGCCGACGGAGCCAAGGCGTACGAGGTGTTCGATCCGGTGTCT
GGACGAGTGCAGGTCTCGCGCGACGTGATTTTCGACGAGGGCGCTGGGTGGGACTGGGATGCGGCGGGCGCTGCAGCCGT
CCCCGGCGGCGGAGGTTGCTCAGACTTCACCGTCGAGTACCTGACAACGGCCACATCACTGTCGCCTTCGACCTCGGCTC
CATCATCTGCATCTTCGGGCGCTTCCGCGTCAAGGGCAGTCACGCCGTCGTCCGCCTCGACACCCGCCACCTTGGCATCG
GCCTCAACGCCCGCTACACCGACATTCGTCTCACCGCCACCAGGCATCGACGAGAACCTGGACGCGGAGCAGGATGATTG
TCCACTGCGTTATCGCAGTATGGGTGATCTACTGGGCGACGCACGTACGCCTGGGTTCGCAACCCGGGATCCGGAGGAGG
GGGGGGCTTCATTGTGCGGCACTGCCGCAGAGAATTTTCTTCCGCGTCGCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis