Browse Element(s) Details


OsAffx.21096.1.S1_at

Description gb:NM_194026.1
DB_XREF= gi:34915135
GEN=P0503E05.18
TID=OsAffx.21096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative wall-associated kinase 1 (P0503E05.18), mRNA.
PROD=putative wall-associated kinase 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2621011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26190NANA1+14823636..14826747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26210OsAffx.21096.1.S1_at11/111+14838579..14840751Calcium binding EGF domain containing protein, expressed
LOC_Os01g26210OsAffx.21096.2.S1_x_at11/111+14838579..14840751Calcium binding EGF domain containing protein, expressed
LOC_Os01g26224Os.45976.1.S1_x_at2/111+14843538..14852706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26240OsAffx.19542.3.S1_x_at6/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26240OsAffx.9949.1.S1_at1/111+14854054..14860990retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g26250OsAffx.8858.1.S1_x_at5/111+14864316..14865774hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21096.1.S1_at--946--51Chr01:14838850..14838874 (25 bp)
ATTGATCCATTACTGCTTTATACGC
LOC_Os01g26210
OsAffx.21096.1.S1_at--739--571Chr01:14838846..14838870 (25 bp)
ATCCATTACTGCTTTATACGCCCAG
LOC_Os01g26210
OsAffx.21096.1.S1_at--705--10471Chr01:14838841..14838865 (25 bp)
TTACTGCTTTATACGCCCAGCTCTA
LOC_Os01g26210
OsAffx.21096.1.S1_at--795--291Chr01:14838831..14838855 (25 bp)
ATACGCCCAGCTCTAGTTCCGTGAA
LOC_Os01g26210
OsAffx.21096.1.S1_at--484--1571Chr01:14838823..14838847 (25 bp)
AGCTCTAGTTCCGTGAACCCAAGGG
LOC_Os01g26210
OsAffx.21096.1.S1_at--730--9531Chr01:14838820..14838844 (25 bp)
TCTAGTTCCGTGAACCCAAGGGATT
LOC_Os01g26210
OsAffx.21096.1.S1_at--283--1051Chr01:14838802..14838826 (25 bp)
AGGGATTTTAATTCGGCAAGTCACA
LOC_Os01g26210
OsAffx.21096.1.S1_at--686--5171Chr01:14838787..14838811 (25 bp)
GCAAGTCACAATGATGCCACTCGAT
LOC_Os01g26210
OsAffx.21096.1.S1_at--279--2851Chr01:14838785..14838809 (25 bp)
AAGTCACAATGATGCCACTCGATGC
LOC_Os01g26210
OsAffx.21096.1.S1_at--451--3331Chr01:14838770..14838794 (25 bp)
CACTCGATGCTACACCATGGAGCAA
LOC_Os01g26210
OsAffx.21096.1.S1_at--159--9391Chr01:14838767..14838791 (25 bp)
TCGATGCTACACCATGGAGCAAGAA
LOC_Os01g26210
Target Sequence 
ATTGATCCATTACTGCTTTATACGCCCAGCTCTAGTTCCGTGAACCCAAGGGATTTTAATTCGGCAAGTCACAATGATGC
CACTCGATGCTACACCATGGAGCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis