Browse Element(s) Details


OsAffx.21286.1.S1_at

Description gb:NM_193203.1
DB_XREF= gi:34913489
GEN=OJ1619_F12.13
TID=OsAffx.21286.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative glucan synthase (OJ1619_F12.13), mRNA.
PROD=putative glucan synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g348809/11glycosyl transferase family 48 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34840NANA1+19563216..19566835retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34850Os.19896.2.S1_x_at11/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34850Os.57530.1.S1_x_at6/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34860Os.53856.1.S1_at11/111+19572000..19575033expressed protein
LOC_Os01g34860OsAffx.5148.1.S1_x_at4/111+19572000..19575033expressed protein
LOC_Os01g34870Os.37127.1.A1_at10/111+19579739..19584249Barren protein, expressed
LOC_Os01g34880OsAffx.21286.1.S1_at9/111+19585422..19587686glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34900OsAffx.27867.1.S1_s_at2/111+19608274..19609113glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34910NANA1+19611808..19613796hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21286.1.S1_at--968--10431Chr01:19585945..19585969 (25 bp)
TTATGTTCCGCATTCTCAAGGGCCT
LOC_Os01g34880
OsAffx.21286.1.S1_at--178--9251Chr01:19585915..19585939 (25 bp)
TCCTTGGTTTTGTCTCTGTGATGGC
LOC_Os01g34880
OsAffx.21286.1.S1_at--1128--851Chr01:19585895..19585919 (25 bp)
ATGGCTGTATTATTCGTCGTTTGTA
LOC_Os01g34880
OsAffx.21286.1.S1_at--822--7051Chr01:19585873..19585897 (25 bp)
GTAACCTCACAATTTCGGATGTTTT
LOC_Os01g34880
OsAffx.21286.1.S1_at--258--4871Chr01:19585847..19585871 (25 bp)
GCTAGTATTCTTGGGTTCATGCCTA
LOC_Os01g34880
OsAffx.21286.1.S1_at--736--931Chr01:19585603..19585627 (25 bp)
AGGCAATGCTGTGGGATTCCATCAT
LOC_Os01g34880
OsAffx.21286.1.S1_at--1018--1431Chr01:19585558..19585582 (25 bp)
AGAACCTGATGGGACTCGTCCTCTT
LOC_Os01g34880
OsAffx.21286.1.S1_at--975--1231Chr01:19585492..19585516 (25 bp)
AGTTCCAGACACGACTGCTCTTCAA
LOC_Os01g34880
OsAffx.21286.1.S1_at--304--7551Chr01:19585453..19585477 (25 bp)
GTGGCCTCCAGATCTCAAGGATCCT
LOC_Os01g34880
OsAffx.21286.1.S1_at--1124--4011Chr01:19585037..19585392 (25 bp)
CGTCTCCTCCGAAATGTCATAGTTC
NONE
OsAffx.21286.1.S1_at--938--3231Chr01:19584998..19585022 (25 bp)
CAAGCAACCTCACCAGCAAGATTGT
NONE
Target Sequence 
TTATGTTCCGCATTCTCAAGGGCCTCCTGTTCCTTGGTTTTGTCTCTGTGATGGCTGTATTATTCGTCGTTTGTAACCTC
ACAATTTCGGATGTTTTTGCTAGTATTCTTGGGTTCATGCCTACTGNNNNNNNNNNNNNNNNNATTGGGCAGGCATGTTC
GCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCCATCATGGAGCTCGGGAGGTCGTACGAGAACCTGATGGGACTCGTCC
TCTTCCTCCCCATCGGCCTCTTGTCATGGTTCCCCTTCGTGTCCGAGTTCCAGACACGACTGCTCTTCAACCAGGCCTTC
AGCCGTGGCCTCCAGATCTCAAGGATCCTCGCCGGGCAAAAGGACATTGGAGAGGAATGAATGAATGGATGAATGGCCCC
TCCTGGCCTCGTCTCCTCCGAAATGTCATAGTTCGTGTTTTCGAAGGACAAGCAACCTCACCAGCAAGATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis